NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181389_1011770

Scaffold Ga0181389_1011770


Overview

Basic Information
Taxon OID3300017746 Open in IMG/M
Scaffold IDGa0181389_1011770 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2873
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027199Metagenome / Metatranscriptome195Y
F055492Metagenome / Metatranscriptome138Y
F105328Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0181389_10117705F105328N/AMEKNIWEQLEEHINDNLGTYGLELMDRFLHLKEDAEDLGMCPEDTEERQTELEQMHGEAHVPGSR
Ga0181389_10117706F027199N/AMDHLKLFIKGAIEFQKETFDCSDMSDEEIFECVMENVESMIEHYNYSDFTRDSN
Ga0181389_10117708F055492N/AMEKETQTISFELTFTYGKEEQDEFGSVESFIEEMIDQNSSDFNDVDSWDVE

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