Scaffold Ga0181402_1030004

Overview

Basic Information

• Taxon OID: 3300017743
• Scaffold ID: Ga0181402_1030004
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1519
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012117	Metagenome / Metatranscriptome	283	N
F018155	Metagenome / Metatranscriptome	236	Y
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181402_10300041	F012117	GGAG	MVDILGGMSSSNESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPSTFKSGWGRYTKADGFEYSWDDKFGVVAPKPADDYKRAFSAWVFPQGAQHAYLWQRFTFAESSAFNSILGGFWNQMDSSSDSLPVVKYEGSKPIQVGMGNSSELTFSFAKFAPRSADFVIPSWYTDQEAPVEDTFKDPNAGLADKVQEMIDKNA
Ga0181402_10300044	F067646	AGGA	MIEWILYIIAGIFGLVAIGGVISVLAAIYILKELD
Ga0181402_10300045	F018155	GAG	MGQNSKAVARRREELKAEKLDKQIKTYYFQKGAGQHYREITYMSGKVVRTNFND