Scaffold Ga0181402_1000574

Overview

Basic Information

• Taxon OID: 3300017743
• Scaffold ID: Ga0181402_1000574
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13740
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (34.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014724	Metagenome / Metatranscriptome	260	Y
F031064	Metagenome / Metatranscriptome	183	Y
F032304	Metagenome / Metatranscriptome	180	Y
F044418	Metagenome / Metatranscriptome	154	N
F045676	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181402_100057411	F044418	GAGG	MSHEQRMIDYAQKWYEANDLETEKKNGNDLYLRVNDNVFTEVSHCDIRQKAILWLQSELEGVKYS
Ga0181402_100057412	F014724	AGGAG	MKEELYAIKTAIDGVADEMLENRRHANMGDLVKVMENISSTLCSISFDLKDLVEQKKHENEVRVALHR
Ga0181402_100057422	F032304	N/A	MKHRDSGNLKILKQLRKCPEIKDIRATAKGYMLMATNGKQYLTHLSPKAHHPLRKWCRENTSIQALKF
Ga0181402_100057431	F045676	N/A	MSEREPYPQLDCALAMSKARGNLNFLLNRTKEEWSETFTTAEAIRDAHAALDQAQKEYKKVLTLLTNSNTL
Ga0181402_100057432	F031064	AGGA	MTKIKEPFNKGDVLISRDNQILQYQGEFNHPELGLIAEVRIYRTDRIVGIRFEDVKLHPFFA