NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181399_1006540

Scaffold Ga0181399_1006540


Overview

Basic Information
Taxon OID3300017742 Open in IMG/M
Scaffold IDGa0181399_1006540 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3553
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002430Metagenome / Metatranscriptome560Y
F007947Metagenome / Metatranscriptome342Y
F016061Metagenome250Y
F020896Metagenome / Metatranscriptome221N
F028350Metagenome / Metatranscriptome192Y
F061818Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0181399_100654011F007947N/AMLDCNTILCLYNQMPDVGMDDLLVIGYLVVGLAIIIYLVMDALKEK
Ga0181399_100654012F016061AGGAGMSYITVKATNILNTLTGTKPTIDRINKRSFNRMGKYYVGASASGKFLQVNDGKHVRYYGNPFWNLYRVVSKHGTDYVIHQAK
Ga0181399_100654014F028350N/ALTMRIKPNIVNPVARAVALSRRRSQAVPDKTKYNRKKDKDNANQNRSNEESENPKG
Ga0181399_10065403F020896AGGAGMTKKKEKTQWEINQEQAAATWKSMTAKQQQAVLEMLQAFVPIRQAVSELCDISYDDLRNMDQAWYTLRRLLVDDSVEVKYWNY
Ga0181399_10065406F002430AGGAGMTLNLPKKQVNAILVALDAEIEMQLGGRPVDWESFPEVAALLMAYYTTRCKFDGGEHE
Ga0181399_10065407F061818AGGAGMTKSQEFWAWIDKCPDGVYVYHDFTDDEDDQKIHVFGFAVPKENDNDDA
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