Scaffold Ga0181365_1022687

Overview

Basic Information

• Taxon OID: 3300017736
• Scaffold ID: Ga0181365_1022687
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1580
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017789	Metagenome	238	Y
F034150	Metagenome / Metatranscriptome	175	Y
F104700	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181365_10226872	F104700	AGG	MKISKLIDVDPNTKLETISTCGGFNALYFPHPLGREKYGYYLITDAFGEQPPVAGEKCTLGKFTDDAQFEGYMDIEKWEGL
Ga0181365_10226873	F034150	AGG	MNTGTNAQSKPLFEGQIVKFKSPHADVMLYDICKRNAKYGTLEWFALNDPLPEQIQNAVWQQGYSLIYQAIDLP
Ga0181365_10226875	F017789	AGG	MKTYVWKYLVCSMAITDLADLETNGSIPEDWKFTLWKGKTLYDEVGSAWRERSEKTVYLSHKDAPDSKQRWFAPDTVVDIWKVKL