Scaffold Ga0181398_1000268

Overview

Basic Information

• Taxon OID: 3300017725
• Scaffold ID: Ga0181398_1000268
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16016
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043682	Metagenome	156	Y
F049292	Metagenome	147	Y
F055275	Metagenome / Metatranscriptome	139	Y
F079342	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181398_100026813	F079342	GGAG	MTTIQARSLENARKSLARARKELELARINDTHYRGVEYTPVSQTHETHGTFVYRGRTYTK
Ga0181398_100026814	F055275	AGG	MEQTELTFTMNERSIRALHSAVVFTLEKWAGQGELDQECLLGMKPALQGCLFEFQLNRSR
Ga0181398_100026821	F043682	GGAGG	MTPLIFCSILAGYTITGAVESQPGWMTVDYLDQRMTADYIVIPMDAYLECYPNHAAGLTPLEE
Ga0181398_10002689	F049292	N/A	MEFVIGPVLALLISLKYTQQQNTKQQKLVTSCLVAKRKEYDALIARVELIEKRNEAVDKEMLQKIMTTVMPIAKAVNKLNQEVGL