Scaffold Ga0181362_1005697

Overview

Basic Information

• Taxon OID: 3300017723
• Scaffold ID: Ga0181362_1005697
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2646
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029109	Metagenome	189	Y
F047681	Metagenome	149	N
F105189	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181362_10056972	F047681	AGAAGG	MPQIVTAAELRQILGVSVSLYSNEYLEQMIDSAELTILPLLTGYQSAVTEVFVENSIAYYGTQRVNYFVPGQDVVITGCGIYDATVTVTDDRIAPMVFTSATGEADSTYTIPIIPSGLACIDGATAGDLYSGVAPIKSAILVVSVEVFQSVTAPGNQIMSDAFQPSPFVLGRSLTSRIVGLLGPFLEVETMCL
Ga0181362_10056976	F029109	GGAG	MAFKATKGQGSFRIEVEPYELKNLISTLNKLDKETQGRVRDAAQPLSKRLAGQLMMFGGSSPTPQTKLVLQSMLTPRDRLIRVDLGGPKKVGRPYGGTPSKSGKGKNVGRSAASAGALLWGSEYGSHAGVDTAGRKYTNRFKAPANKSGYWINDAVDYYTPIVAKEYIAVVKGIINDLRL
Ga0181362_10056977	F105189	GAGG	MAGIPKVKITFDADFDELKKGIAGGQKEIESFGSRVSDFGKKAGLAFAVAGAA