Scaffold Ga0181373_1022791

Overview

Basic Information

• Taxon OID: 3300017721
• Scaffold ID: Ga0181373_1022791
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1165
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019731	Metagenome / Metatranscriptome	228	Y
F024414	Metagenome / Metatranscriptome	206	Y
F033113	Metagenome / Metatranscriptome	178	Y
F060981	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181373_10227911	F019731	N/A	IQSKNILEQRLNQSNQRTGESIMDDLDNILTNIDLEEEKLETEEKDWYCEDCEHGPMMDGDTHCTRCGIKAGKNYKQEELTGWEDEDIESEVEEIW
Ga0181373_10227912	F060981	GGAGG	MVAVMTVDTKERIADLERQKIEINNRIEILSYSGNHKRMLELEQEIWEIEDTIRKLMP
Ga0181373_10227913	F033113	N/A	MLKTIEKKIQLFVDGIGGIQRQEIVHGTLYVKLDNDRDCDFIHTEIRKFYKEFINPEGGVNMYAVGDEFAFDFVPEDREAPVFTDEEKGIWSEFAEEDQYKNMPDEVDMMLNLLEEQKRG
Ga0181373_10227914	F024414	AGGGGG	MGTRLADIIFDRHEDFLYEDSRAMKLTPYVMSERCLQVEAVKIYDDYKKGDTSTLTYILEGGFKGFHNMDSSELIQEYKEIEDKWY