NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181383_1051818

Scaffold Ga0181383_1051818


Overview

Basic Information
Taxon OID3300017720 Open in IMG/M
Scaffold IDGa0181383_1051818 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1102
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058430Metagenome135Y
F092221Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0181383_10518181F058430N/AVFLDFTSYNSGVVPKDDEFTVLDTVNFTSTTFDVTVPSQSASNGNVNISLPTDFCFYLVNTGTVTNINQFFPLFVASIDSSQQNYSLTLEEILPFINHPTVQAGSNFVSANNEVAPKQRGLMLKRGQALYVAASGANALTNGFYCNIQGGFY
Ga0181383_10518182F092221AGGTGGMAFEIKGFGEPSKFNFKNFQNFNNKPKKEGIYPRGSDGYQFESEVKFYNQDSLWTRWRRGYELYVMMQTLLGSTSKERDRRGDYRLFFTFQQFPGVFIPARIFTFPSKNKELGEHVCGMRDTDGFSFYNFGLPILEVRYLAPSVDATYQQNGTTLVVTKTDHGLFPGDDVFLDISTGNAIDETLQIVSKTQNTFTLTASNSATTSGNVVYHN

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