Scaffold Ga0181390_1018353

Overview

Basic Information

• Taxon OID: 3300017719
• Scaffold ID: Ga0181390_1018353
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2321
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014373	Metagenome / Metatranscriptome	263	N
F016661	Metagenome	245	Y
F079927	Metagenome	115	N
F105152	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181390_10183531	F014373	AGGAG	MSRWKACDVILNEYELRRRDRITDEHIDLCSVCHSASDEAIEENWSLAEETGIIRSNN
Ga0181390_10183533	F105152	GGAG	MSREYCRIDDDPSYDFSDYEDNTGYYTPYDDREVEYDPIDKVEMRERLKEVKQRRGITND
Ga0181390_10183534	F079927	GAGG	MSKYYREQSQLEDEADEKYLTMYQYYKELTDYERGEYDALHSYPFDESEEANKEYTEGYRTGYEYAQRMGAKDNE
Ga0181390_10183536	F016661	GAGG	MNYNAERYLALKRYELEVKRDKWRTILWNVSVTGIFVMVLIQVSKVI