NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181390_1000766

Scaffold Ga0181390_1000766


Overview

Basic Information
Taxon OID3300017719 Open in IMG/M
Scaffold IDGa0181390_1000766 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14586
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F039146Metagenome / Metatranscriptome164N
F046001Metagenome / Metatranscriptome152N
F051139Metagenome / Metatranscriptome144Y
F072257Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0181390_100076618F046001N/AMTKILFNTMYKTINEITNSNKLNRPVHIIYGGLYVDNSDIETVTKILDREVVKYKLRSI
Ga0181390_100076626F051139N/AMQKAKLKLPVKQFHKLYDFLGEILDHEADTNDFNMENSDIELIEDIRTELFNQIPEEKPTETTYAYTTVKELSSITPIKLYEIDRIKTGGFLMQNDRGSQIFCIDKGCSHLSSDQSKNWNFITITND
Ga0181390_100076627F072257N/AMQELDRVVHQWCDDNDRWMYIEYDRDGRVMGLNFMQGDAYECFKRDWCVSDRGLTDFYTQMLYTFAYEQRNVPEHCFINSCMWAYHSAISSHDEYAAPCRRNTHCKR
Ga0181390_100076628F005129N/AMTYKVKIAEVNKSINLAHHSYIDLGIFTVNAATYSFLYSAVETDWGADINETELEFQVNNKRCKYVGFRDLYNQLHGDGSFKVFEANLTAQIEDAVAKKITEEYPGTKVIY
Ga0181390_10007667F039146GGAMKKKKANCGCFSKYMKPSIQGTKGSKGRNGWDAKPVFRITNPGRR
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Institute for Fundamental Biomedical Research
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