Scaffold Ga0181350_1083704

Overview

Basic Information

• Taxon OID: 3300017716
• Scaffold ID: Ga0181350_1083704
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 804
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C493 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022817	Metagenome / Metatranscriptome	212	Y
F039116	Metagenome / Metatranscriptome	164	Y
F102851	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_10837041	F102851	N/A	EKKIDIFGSEFEDYVPAGSNIPVSERRSLVAAGALIATGTSSRMRRK
Ga0181350_10837042	F039116	AGCAG	MGWNRHGANHLVRPDTTTSIATNGVRHFATLGYIPYTERSRMNKMIAKTLDLCQRLVSLFIASALPIITGGAILGVDIVKSAGVAGLTALFGVVQKLAAASVDGELSAEEIQAAFGSAKK
Ga0181350_10837044	F022817	N/A	MGKSSKHYLPSGKEYKGATHKMNGQVHSGAKHSAS