Scaffold Ga0181350_1028377

Overview

Basic Information

• Taxon OID: 3300017716
• Scaffold ID: Ga0181350_1028377
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1546
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014613	Metagenome / Metatranscriptome	261	Y
F033029	Metagenome / Metatranscriptome	178	N
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_10283771	F033029	N/A	MDENRCRWALGISEMRADAHPFKCSTCLAVTPHIELHRYETSDIPEAPEEVWLIECQRCFLQRIIYPSDRVASKEDDITRCDKCG
Ga0181350_10283773	F059096	N/A	MINDAAERAEVPRPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISDFAGREKLDVELPR
Ga0181350_10283775	F014613	N/A	MFPNLSDTQVFAITIGVPFFGLYLWSLWSSAKAKAFNEGYKRGRASVRYTEIIK