Scaffold Ga0181412_1001359

Overview

Basic Information

• Taxon OID: 3300017714
• Scaffold ID: Ga0181412_1001359
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9443
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (36.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020526	Metagenome / Metatranscriptome	223	Y
F025996	Metagenome	199	Y
F031080	Metagenome / Metatranscriptome	183	Y
F082531	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181412_100135915	F020526	GAG	MTDKDRTTMIEEQCEHIITLCQSYVEADQLEDVGNIRALYEEYGEWLDTYNGMPNSDEEYTTAWMQNWCTN
Ga0181412_100135919	F031080	N/A	MNDLLTEIQDTPGEIFDIPEMQDLYNEKKFDLEEYLNSDYDY
Ga0181412_10013596	F082531	N/A	MTVNLPSEMNTDDIEMFIKAFDDFMQHAETEIDSYEKRKEAKDYTDKFFERKAAELEVTVDYYMQEFL
Ga0181412_10013599	F025996	AGGAG	MMTPQREMHIGELDKSIVALSKRKLKLLQEVEQINLDIAFLRKQQEDLTDV