Scaffold Ga0181403

Basic Information
Taxon OID	3300017710 Open in IMG/M
Scaffold ID	Ga0181403_1000427 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10232
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (69.70%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10232

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (69.70%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F005547	Metagenome	397	Y
F018286	Metagenome	236	Y
F019158	Metagenome	231	Y
F030886	Metagenome	184	Y
F053549	Metagenome	141	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100042718	F030886	AGG	MSYHDQPHGYMRSGIGVVNPLIRIENKLKKVQEVLDNISDASILTANDLKTKLQKVLDD
Ga0181403_100042720	F018286	GGAG	MNMLTTFVLMGVIDSHDGVFATVELNTNPASNGGPATAIMPVAAFPCEISEGKLFYIVKLHEEQDAVIICAEEESEQGRDEPDTCMH
Ga0181403_100042721	F079212	GGAGG	VSKDETNLIHVCIESHYNMIRMHRRAIIELSRKAIKEREWCDECFDFEIINESGRSSKSE
Ga0181403_100042724	F053549	GGA	MKVGDLVKWESVLNDSMDHHSEDHGIVVKMSRTGHDSESAQILFTDGELWWMDTRKLRIVNEAG
Ga0181403_100042727	F005547	AGGA	MKVWVMQGSYEGELFSSVHLTQKGCALACILDITEFLGVEDEETALEVMNSCNAYRETDGEQTEAFEWDHNKLKEMTSEQLWKIFADWCEMSWDRMADRTYYLDANAVEIQG
Ga0181403_100042732	F019158	N/A	MTIVIDSDDTQGIDAALKIARLMHVKYVGTPAAQKESFGKIEFIKMLRKFMKESIEHLDDPDSNQVKDLNDMGNLRNAKRFADRMFRGER
Ga0181403_100042733	F004771	GAGG	MKRIKKGDLVRMHTHDTGLVGIVLERHPKAISTTPAQLGIMWAGGSGKIDWEPEGWLEVVSESR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181403_1000427

Overview

Ecosystem & Geography

Associated Families

Sequences