Scaffold Ga0181387

Basic Information
Taxon OID	3300017709 Open in IMG/M
Scaffold ID	Ga0181387_1005125 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2573
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2573

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021526	Metagenome	218	Y
F026851	Metagenome	196	Y
F081221	Metagenome	114	N
F087026	Metagenome	110	Y
F101070	Metagenome	102	Y
F105104	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181387_10051252	F101070	GGAGG	MGRGKIRVDPMKLEAGDLIVTDGRMSLELGDVLLAVCKLSGEEMSETGKRHPFIDGRRVGDHWRLLSRLGVVEIWLDPYASWVVQVVKGQKETST
Ga0181387_10051253	F087026	AGGAGG	MASGKWKAGDLVRVESVQKTGWGDERDSHLVLVLRIYNSKFSQPKQQHYPLTAYLDELVHKDKDVLYEVLRDDGKYLKLGLEDYAWSGVRLTNRLVQRSCAED
Ga0181387_10051254	F081221	AGGA	MDDILHALYNILILFIGFSAVICASLTAVALINLVSSSMLTYRDDRLLLAWALPSGLFFSGLLMVLLGWT
Ga0181387_10051257	F105104	AGGAG	MLHHIYYINPAGADNYMIVPFDEISGTVVFLESLDYEVVAYWPIQEEA
Ga0181387_10051258	F026851	AGGA	MTQQQIRQLLKDPDNMTPLEHAEVGRMKQAYFSAVAQETEAYISAKEAYDDAKEFMDLHDPGEREVLMQLLKNKRDCERNMTIIDTELEVHFDISA
Ga0181387_10051259	F021526	GGAG	MKYFSIDYRSPPSGMGQIIDTEKPEKIGDQYNFILIDYGSDPHEDISYVMTKYFYSVQAAQEGWAGPIMTDIFQYLRDSGVTHVHDGELAYEEEGADDDGYFTLDRWIEIMSSYL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181387_1005125

Overview

Ecosystem & Geography

Associated Families

Sequences