Scaffold Ga0181369_1003950

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1003950
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4030
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040673	Metagenome / Metatranscriptome	161	Y
F051183	Metagenome / Metatranscriptome	144	N
F077329	Metagenome / Metatranscriptome	117	Y
F097161	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10039501	F077329	AGGAG	MIDRTMWFLYNRLGSNDKQAPSIDTISGMFFNYWKIMNVMDINTQTLSAIDIYNGLNNCYDETAKETAKNLYEYGEVAANVDYRVSYYEQEHEIHDVYANCVNLNEVLIEGSEPEFDDTDPFKEALNEVVYEDIDYEVESESFNIYEDGIEWYKTCHPGDDKLMTYMYDTGKNLDWDAIDDFLGDKLSLVEAQNGDMHGTQVRKFMLDRLAKQNIDIINSLEQTENGMKEVNPNTGELQD
Ga0181369_100395010	F051183	AGGAG	MAITGTKVKTNTSNKNWFINHCRIVEAEQIDSQYNDCSIRMKYEDVDSGYNYTAFINQNFEKDNNGIVTGLKYPDDVNTLYLAAKADLNVSDVGQVNVEKLIGKEVAVLNYKSTGKYKNATWGVVSSLDNTDELGKRFMDQVAKGYP
Ga0181369_10039504	F040673	AGGA	METNKKDMDDMWVCDYCGSEEVQTRAWIIINTEQVMDTLDDIYWCDGCRDEVNAITYFEFQEKISIECGGNKDKYDEIMDGSRM
Ga0181369_10039505	F097161	GGAG	MDKIDAKIEIDVYYSFDEETGYHLDSDNVRSDFEQALDDVEANVSHLNHERQEHLRTKHMEG