Scaffold Ga0181377_1000110

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1000110
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32085
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005433	Metagenome / Metatranscriptome	401	Y
F022758	Metagenome / Metatranscriptome	213	Y
F031062	Metagenome / Metatranscriptome	183	Y
F051480	Metagenome / Metatranscriptome	144	Y
F068149	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100011017	F031062	AGGA	MNHRDFEIARKKERTKRSHKAIHKKQLQRPLSRPRADKNMLASDPRLQKI
Ga0181377_100011027	F051480	N/A	MENWCRLGHRKFFRGLIASRQPEEVVALIESYNKNLKAIEGSYLDVVIRSEGAFSYQDIMTMPVDAIKLLVERMNARVEDINKARKGPKR
Ga0181377_100011028	F068149	N/A	MKANKPHMTLDEFQTKFLQFAEQQVEPLKDDGYPVCPYAKSARIKRALQFLDGRTDITVMDNFDHKTFQMGIVWLGDIDDITPIEKICEEYRKKNPHLLYFTSTRQSGHFVKNFTDCVFIQRADDLLLKRKHLHDNTKYYDSWPKEYYKLIMGH
Ga0181377_10001108	F005433	AGGAG	MSIRTRFEIETFVLGAHPTPARKAHALTQELMQAREQQHPDLPVLEEVYKNFSAEHDVDALLANINDSEEEYWVHRLAKLAAVDILTIGKVQPEHMNYMVALEDEAFSACVKETTSIAKQLNYEVQQIEAELQSELASEK
Ga0181377_10001109	F022758	AGGAG	MALPATGNEITMGEVRNYFGLSGNISMSTLGAYISPSVSTNIALSSTFGGWQNPNSTGAD