Scaffold Ga0181377

Basic Information
Taxon OID	3300017706 Open in IMG/M
Scaffold ID	Ga0181377_1000013 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017706 Open in IMG/M

Scaffold ID

Ga0181377_1000013 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	105939
Total Scaffold Genes	175 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	128 (73.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

105939

Total Scaffold Genes

175 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

128 (73.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-29.499

Long. (^o)

-71.609

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009293	Metagenome / Metatranscriptome	320	Y
F040347	Metagenome / Metatranscriptome	162	N
F042025	Metagenome / Metatranscriptome	159	Y
F090892	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100001315	F042025	N/A	MDRSLIQKMHVSILFPYRNNAYSPNDDLALMEDIMQNGIVDPIILGVGVWSRKVRLDTGNHRIYLAPKLGITHLPVIAHVHNYCTFEPGNGDHSYDCPYITPKKEWLDTDYYAKPSDVLDVMEILKGMQIG
Ga0181377_100001331	F040347	GGAG	MKNRWDVTVETSNYDFNPFRESDHGSGFRTVANIYEDWTEEVKTARSKEYDFYWPSPVAPDGDHFSYDYEELLCKDWGIPDDHVIYRQWTTDETTPILSSLADKVGLADAQINIQTQYTGMMLHLHIDSLTGLRKERTDNAASRATDVEWGRVFVMLDEWAPGHIIQFGNTYVHPWKKGDVIWFDWSNIPHSTVNTGPWPRSLAKVTGKVTEKYKEFVQAGS
Ga0181377_100001384	F090892	AGGAG	MVDSYLTPKLKEGEQVDLSLYSPRQRTNIRLYGLDFKDALPVDIFEYKTKWKSTATKVDIRGNYTKAQKWCKTNCFHQDFEVQKYANPDDSHAVYFKNPEEAMLFKLSI
Ga0181377_100001399	F009293	GGAG	MTRIALDTNAAQEFTVHVFDATDINSITQSDKIYKCFESGWPVVIKNLTIPNLDYDYYDNLPDWTIKDNKWIMPWYNSHIKKRTRLELERGWTDKQIDVFHKKHKQSNNGWNEVFDMIFPKYNTSERMLSHRYNTLVENKLHLDELDEQHTGAEQQIRMFVNLDKKRPRVLTFGPDLEQMWYKYKDEFNLQELDKTNIHTFITEMRNRCVWNDKMWDQFHHPLHYITFDPGDIWFFNAQWITHQIVFGTKLQCFEADILDTSLIYPDLCMKERIANLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181377_1000013

Overview

Ecosystem & Geography

Associated Families

Sequences