Scaffold Ga0181372_1004921

Overview

Basic Information

• Taxon OID: 3300017705
• Scaffold ID: Ga0181372_1004921
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2620
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016739	Metagenome / Metatranscriptome	245	Y
F042579	Metagenome	158	N
F044160	Metagenome	155	N
F098083	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181372_10049211	F098083	N/A	MIHFWVKLISFILTGVFVGMGNWESAALFFMVYLGELCGSICEAIENKEL
Ga0181372_10049214	F042579	N/A	MKKFNGFEKGLIIDALNYYVANLEAEVEEASGDGVTIVAPGFYTMAKNELIDKVESLTKKSK
Ga0181372_10049216	F044160	N/A	MVKFWTLLSGTSYIASISNHSFTRNPMLAVAYDSIKKADIAANRWKRKYGEPVMVHVILEHDVERYRSKDDYEDRAHSAFYGENL
Ga0181372_10049217	F016739	N/A	MRLNGGLLSSGTSEWVKLRQAWKKWNASCHPDDQIDWNEFLEEHS