Scaffold Ga0181364_1026258

Overview

Basic Information

• Taxon OID: 3300017701
• Scaffold ID: Ga0181364_1026258
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 948
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001688	Metagenome / Metatranscriptome	651	Y
F051686	Metagenome	143	Y
F069840	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181364_10262581	F069840	N/A	TQRVQLLRQRRKALGLTRVEFYLSLEHAAKVRGYVSKLTKEKTK
Ga0181364_10262583	F001688	N/A	MFKYLWTELKLMTKTVTPAQAIAHELIHAEHDLLMAETGVEYAQSMVTYNKNRVKRLKAYLGKTEEIV
Ga0181364_10262585	F051686	GAGG	MIRQCDTGGICAHIPQCDHFCHFTNAELETETRKVKPWPIVPDDIEPVSDQWHKIGVVMLWCIFVVLAVICLALFFTGIWIWS