Scaffold Ga0182218_1137494

Overview

Basic Information

• Taxon OID: 3300017683
• Scaffold ID: Ga0182218_1137494
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_03OCT2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 520
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025926	Metagenome	199	Y
F033684	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182218_11374941	F033684	GGAGG	MEALQGRDAQEDSPTVVHLTTYLLALDEQYDRQALELRICLRRAEEAEIFTRM
Ga0182218_11374942	F025926	GAG	LILFQRWKEPHGGTSNGLFIDLAKVPYGFAGHNLVCVDEAKPGCGHITGFSDARECLTLPNIDSNFTPLSAMLFILTALILGMIFDFKFLQGGIQDFGKTLSV