NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187714_127616

Scaffold Ga0187714_127616


Overview

Basic Information
Taxon OID3300017558 Open in IMG/M
Scaffold IDGa0187714_127616 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 200 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0008_2) (SRX549025-SRR1294411)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameUSA: Lake Texoma, Oklahoma
CoordinatesLat. (o)33.98Long. (o)-96.67Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043734Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0187714_1276161F043734N/AAVSECTSRRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE

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