3300017558: Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 200 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0008_2) (SRX549025-SRR1294411)

Overview

Basic Information

• IMG/M Taxon OID: 3300017558
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212361 | Ga0187714
• Sample Name: Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 200 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0008_2) (SRX549025-SRR1294411)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44230613
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Lake Texoma, Oklahoma
• Coordinates
  • Lat. (^o): 33.98
  • Long. (^o): -96.67
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008555	Metatranscriptome	331	Y
F017834	Metatranscriptome	238	Y
F043734	Metagenome / Metatranscriptome	155	Y
F057823	Metatranscriptome	135	N
F071920	Metagenome / Metatranscriptome	121	Y
F079481	Metatranscriptome	115	N
F080844	Metagenome / Metatranscriptome	114	N
F094737	Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187714_109774	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	1426
Ga0187714_114687	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1095
Ga0187714_117773	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	933
Ga0187714_117882	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	926
Ga0187714_119324	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	860
Ga0187714_121702	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	754
Ga0187714_121709	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	754
Ga0187714_127616	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187714_109774	Ga0187714_1097742	F008555	MIYALTLIPAAVLAANTAEVSTSDVRKGAAFDNIKASWGKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW
Ga0187714_114687	Ga0187714_1146871	F079481	FVSARLATASGRYTRTMGTAAGFFGLTYQGPVNGLASNTLSIFNMDHPDDRAWLKLTFDFVAPDGKLKHDQIVELLQFFYRQRAEGPTRSGSYLHSYPQSEAAYMSSMFSGPDATLGFHELLSHLMEAQANFAEPTAPVEYNSNSVFRNDLNKHTRKMLDPQQQFRKPLLTSQEVGWAVKQTAASGRPFHLRTSATTQFADAAEKQAWGRSIGGEFSEFATKQLIQFGGFGMGV
Ga0187714_117773	Ga0187714_1177731	F071920	AVSGMLVLPAIAAAAPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPESIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMLQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDVLEA
Ga0187714_117882	Ga0187714_1178821	F057823	SRPFLFSPMATQQFVSRTGSSRGVYKRNGEIMAVPHPSAEASWAQNEKTAAHGITASTMKDSFKDPNLKAALTPYHPNAQRSRLPVSFKNEAKPYKRFCQVRNQQTYDFFDKGASGAGFVRFRTTSQNYYDYDTKALSVGESNQGIVVRRIFKELTSAL
Ga0187714_119324	Ga0187714_1193241	F057823	SRPFLFSPMATQQFVSRTGSSRGVYKRNGEIMAVPHPSAEASWAQNEKTAAHGITASTMKDSFKDPNLKAALTPYHPNAQRSRLPVSFKNEAKPYKRFCQVRNQQTYDFFDKGASGAGFVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM
Ga0187714_121702	Ga0187714_1217021	F017834	ALPAFLGLHLQPTHSVRPQSHMGKGKGVASFDLATALTKKETRTMRKSECMIQYHLARMPMYGAYESAQYAKANELRENMKNLEMKAKERWERGHV
Ga0187714_121709	Ga0187714_1217091	F094737	PSVRYQMVLSDSQAISRGFADERTGRIRTFQAGPDGPPGLDSQLCGFGAPRPTEVAKEVPLIEGRMKMFPGKHSSVGSVKEAVATGCPAIVHMQMDSDQWMSTYRATIDERQPTFRKGREGKKMVDALFGAKELYRPPREVYVEPKGAPPTAVRDMRVYKHMGTLSKAGQW
Ga0187714_123725	Ga0187714_1237251	F080844	KAAEVQGMAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET
Ga0187714_127616	Ga0187714_1276161	F043734	AVSECTSRRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE