NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186907_14054

Scaffold Ga0186907_14054


Overview

Basic Information
Taxon OID3300017482 Open in IMG/M
Scaffold IDGa0186907_14054 Open in IMG/M
Source Dataset NameHotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 2. Combined Assembly of Gp0212715, Gp0212716
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9497
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (38.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location NameYNP, Wyoming, USA
CoordinatesLat. (o)44.428Long. (o)-110.5885Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024140Metagenome / Metatranscriptome207Y
F067920Metagenome / Metatranscriptome125N
F084461Metagenome / Metatranscriptome112N
F101504Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0186907_1405415F101504N/ALIYFFENNYPFKSLALYTSYCVITKTTCIVIGNTGSGKSEILNFLKLNFDKVLTLNTISQASLKQIATELNNFDGILFVDDIGAINTEYMRITTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPAVFDEIVSNTSFEANIMDKSYRYYNMRIPDNKPFQHPHIKELQHIKDKFENMKVDIDKQKVEALANNFMTFNSVVRRYKIVNNFVKLTAILNGHKTATSEDYQFVAKMLLNNIIESELLERKGFTSTFKFNTFLFNVMLMSKYYGDVFHYSKLKTYLNVSTKTIYNYAKMNNVKIDNGYIIYDNERILKVLKHVI
Ga0186907_140545F024140N/AMNWKPTSLSHVVSILAIMIALLGINAITFYYVHSPSTTQLVFIELTNITGLIGMSYYMVSFSANEKGVSIESKPQTTT
Ga0186907_140548F084461AGGMSFDLGLLIKNNKAILQTENGKIVLRISFDDLVSAMYNGLPEQSKKVVSITHDGKQIIISFDASILSGMVGIIAR
Ga0186907_140549F067920N/AMPADLVFGISDQGLFGAISSVLEYILSFLKVLVEQASKYAIDFLKQLWDNPEKTITFLTLLGVILV
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