3300017482: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 2. Combined Assembly of Gp0212715, Gp0212716

Overview

Basic Information

• IMG/M Taxon OID: 3300017482
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128960 | Gp0212715 | Ga0186907
• Sample Name: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 2. Combined Assembly of Gp0212715, Gp0212716
• Sequencing Status: Permanent Draft
• Sequencing Center: Stanford University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 83884807
• Sequencing Scaffolds: 12
• Novel Protein Genes: 15
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	1
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	1
Not Available	2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon	1
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Primavirales → Tristromaviridae → Alphatristromavirus → Alphatristromavirus PFV1	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	4
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Yellowstone National Park Obsidian Pool Microbial Communities
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: YNP, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.428
  • Long. (^o): -110.5885
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000750	Metagenome / Metatranscriptome	908	Y
F024140	Metagenome / Metatranscriptome	207	Y
F062912	Metagenome / Metatranscriptome	130	Y
F066921	Metagenome	126	N
F067920	Metagenome / Metatranscriptome	125	N
F080679	Metagenome	115	Y
F084461	Metagenome / Metatranscriptome	112	N
F100050	Metagenome / Metatranscriptome	103	Y
F101504	Metagenome / Metatranscriptome	102	N
F104050	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186907_10077	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	12525
Ga0186907_11407	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	5230
Ga0186907_11428	Not Available	5501
Ga0186907_12396	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon	9917
Ga0186907_13930	All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Primavirales → Tristromaviridae → Alphatristromavirus → Alphatristromavirus PFV1	10226
Ga0186907_14054	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.	9497
Ga0186907_15004	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	6180
Ga0186907_15349	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	5441
Ga0186907_15496	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5205
Ga0186907_15756	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	16995
Ga0186907_16024	Not Available	10305
Ga0186907_16313	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	7571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186907_10077	Ga0186907_1007718	F104050	VSEAKKCIIGLRRHCIVHDALVSDERQKYGTKEFVITYCGMCIKTVYAKAKRKLVNKFSVVNTL
Ga0186907_11407	Ga0186907_114078	F062912	MDPTKVLKVAYDLFLVSDIIDKRSNLDVELLQLLVENDYEIIAKTIIYILIYTVNNHLIYENIRQSYINDAIDLLYIIDKIGFNHDRVIKKFVKLIYQFFSYSLQNKVEFIANKEKRELVKSKLDELVNIIRY
Ga0186907_11428	Ga0186907_114287	F066921	MGEEQEETGRGPTPRAAYARAMRAEEKAQKALEELSEIKSALNDLINALRTHNAPTTPPTPIQAQSLRPGSMIHNVIAEDDEGVTEEIICPTCGTREVRKIPTKIQIKEKEIVPDNYVPAPRSISEALQLLESLRLPDGRTVFESDRFWEKLNELAQKYRPPQKGKR
Ga0186907_12396	Ga0186907_1239617	F104050	MNYTTWRVALKSMPRSKQCIIKLRKYCVVYDNIAKEEKEKYGSKEFVLTYCSLCIKSIYAKAKHKLVNKYSVVNTL
Ga0186907_13930	Ga0186907_1393014	F100050	MGNMFLTMNGVIRYVIATLLATVGGYVGYYFVPIEPFGTAGNVLFVAAIFGLFAGLLELTGFFGNVVNAFLITFPVYFLAPGGITVVWAYGNIGYAIGNVLGQLARLSVKGTIPEAKAL
Ga0186907_14054	Ga0186907_1405415	F101504	LIYFFENNYPFKSLALYTSYCVITKTTCIVIGNTGSGKSEILNFLKLNFDKVLTLNTISQASLKQIATELNNFDGILFVDDIGAINTEYMRITTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPAVFDEIVSNTSFEANIMDKSYRYYNMRIPDNKPFQHPHIKELQHIKDKFENMKVDIDKQKVEALANNFMTFNSVVRRYKIVNNFVKLTAILNGHKTATSEDYQFVAKMLLNNIIESELLERKGFTSTFKFNTFLFNVMLMSKYYGDVFHYSKLKTYLNVSTKTIYNYAKMNNVKIDNGYIIYDNERILKVLKHVI
Ga0186907_14054	Ga0186907_140545	F024140	MNWKPTSLSHVVSILAIMIALLGINAITFYYVHSPSTTQLVFIELTNITGLIGMSYYMVSFSANEKGVSIESKPQTTT
Ga0186907_14054	Ga0186907_140548	F084461	MSFDLGLLIKNNKAILQTENGKIVLRISFDDLVSAMYNGLPEQSKKVVSITHDGKQIIISFDASILSGMVGIIAR
Ga0186907_14054	Ga0186907_140549	F067920	MPADLVFGISDQGLFGAISSVLEYILSFLKVLVEQASKYAIDFLKQLWDNPEKTITFLTLLGVILV
Ga0186907_15004	Ga0186907_150046	F000750	MIASIVVTAVLFSYWLYKKLAKPKPFQFPIDVQTGDVIHSAFGSLLANLSMQGHLFDVAVGVVLYLAYQIFELTVKKDTIYKDIATFTAGYFITLTAKYIPV
Ga0186907_15349	Ga0186907_153496	F000750	MPMYLPLIVTAFLFSYWFFKKRFKAKPLSLPINVQTGDIIHGAFGSLLANLSMHQMYVDVMVGVLMYLAYQFTEFAVKHDEVYKDIATFMAGYFGTLAVGGIPL
Ga0186907_15496	Ga0186907_154964	F104050	MSEVKKCIIRLRKYCVVYESLSSEEREKYGSKEFVITYCGLCIKSVYAKAKRKLVNKFSVVNTL
Ga0186907_15756	Ga0186907_1575631	F000750	MIASIVVTAVLFSYWLYKKLAKPKTFQFPIDVQTGDVIHSAFGSLLANLSMQGHLFDVAVGVVLYLAYQIFDWTVKKDTIYKDVATFTAGYFITLTAEYIPV
Ga0186907_16024	Ga0186907_160248	F080679	MGEIMDEEAISKVLSRKSLRIIRYLYNNDYATLRILEKNLKMNGITVRTYIDLLHKHEVIKVSRVGRAYVIMLNREGKTTKAIIEFLREVGYL
Ga0186907_16313	Ga0186907_163138	F000750	MYLPLIVTAFLFSYWFFKKRFKAKPLSLPINVQTGDIIHGAFGSLLANLSMHQMYVDVMVGVLMYLAYQFTEFAVKHDEVYKDIATFMAGYFGTLAVGGIPL