Scaffold Ga0186376_1013501

Overview

Basic Information

• Taxon OID: 3300017366
• Scaffold ID: Ga0186376_1013501
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Narragansett Bay in marine media K with soil extract, 1:100 phosphorous, 18 C, 35 psu salinity and 409 ?mol photons light - Eutreptiella gymnastica CCMP 1594 (MMETSP0811_2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1197
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: USA: Narragansett Bay
• Coordinates
  • Lat. (^o): 41.6
  • Long. (^o): -71.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035176	Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186376_10135011	F035176	N/A	IFFSSIHRDPHTMPVHSLAEDKPKILFYGAMMAIQNFGFFIMYFQIFPHITNTTECHTLRFWVGFFALDCFVESFCCLWMAMGGYIADTFWFGFGWILHLLVALPYCISTAGIPMAMYSAEGTTCRASMGTAGLTLEPVYWLHAAMFLVYVWMMLSITYYSFLKATFFGKQIGAVDEAPMCTSATPVRPV