Scaffold Ga0186256_103286

Overview

Basic Information

• Taxon OID: 3300017332
• Scaffold ID: Ga0186256_103286
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Puget Sound, Washington in HESNW medium w/o silica, 16 C, 30 psu salinity and 231 ?mol photons light - Noctiluca scintillans (MMETSP0253)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2512
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: USA: Puget Sound, Washington
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080702	Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186256_1032861	F080702	N/A	FGSSHFGSSFIFQFRVRVDSKFSVMSLKVLVAACSWPLVVTQSDGNPHHWDRLRRCDHAGYSPPCGACEGVGGIATSDTASDIKIVPCKVEASTENRLRPIWGDPFTELASHEILIGKKNDIACFQAFPSNDSTSTNCYKPQEVQLWSDMRGKKALVEKANQAGNAWGLLGNVTSTIYHQGANMWIVNQLPLFVTQTICTIPRSGGDPTQPAVNALQYNWVDNLIFVSTETLDVEYGVGSMKLDHWAFGPHHVWTDPATGLVVRMWQPFNGLEVFTPGSWKTEITPEGQGYLDELAADGKTAPKAAMPGGSTFRIKCGDDGFHQDTLEVPHPTSTGDLHRARTKVPRDAYRGESFASMSSVLNKWLLREVPNSRSCDEFSVEELQRLQIVLFTLRDPELNAVYNGTADVRHMPRELDVMAREWESLNAEAARDPELARMHRDGHCHEAVMWYVHHLPESMKASIRDRASLPLLSQMRHDLSLAQPHAVRVQRAYEEKVTCASCHSAVYPNTGGVVTV