3300017332: Metatranscriptome of marine eukaryotic communities from Puget Sound, Washington in HESNW medium w/o silica, 16 C, 30 psu salinity and 231 ?mol photons light - Noctiluca scintillans (MMETSP0253)

Overview

Basic Information

• IMG/M Taxon OID: 3300017332
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211968 | Ga0186256
• Sample Name: Metatranscriptome of marine eukaryotic communities from Puget Sound, Washington in HESNW medium w/o silica, 16 C, 30 psu salinity and 231 ?mol photons light - Noctiluca scintillans (MMETSP0253)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 56152323
• Sequencing Scaffolds: 17
• Novel Protein Genes: 21
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	5
All Organisms → cellular organisms → Eukaryota → Sar	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	7
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Puget Sound, Washington
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000085	Metagenome / Metatranscriptome	2467	Y
F000342	Metatranscriptome	1262	Y
F001051	Metatranscriptome	792	Y
F001154	Metatranscriptome	763	Y
F001618	Metagenome / Metatranscriptome	662	Y
F007529	Metagenome / Metatranscriptome	349	Y
F009075	Metatranscriptome	323	Y
F011080	Metatranscriptome	295	Y
F016002	Metatranscriptome	250	Y
F058161	Metatranscriptome	135	Y
F058162	Metagenome / Metatranscriptome	135	Y
F064389	Metagenome / Metatranscriptome	128	Y
F073576	Metatranscriptome	120	Y
F074344	Metatranscriptome	119	Y
F080702	Metatranscriptome	114	Y
F085123	Metatranscriptome	111	Y
F088217	Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186256_103286	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	2512
Ga0186256_110352	All Organisms → cellular organisms → Eukaryota → Sar	1649
Ga0186256_112263	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1518
Ga0186256_112598	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1498
Ga0186256_113030	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	1470
Ga0186256_113643	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	1431
Ga0186256_114620	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1371
Ga0186256_117716	Not Available	1210
Ga0186256_119441	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1127
Ga0186256_121171	All Organisms → cellular organisms → Eukaryota → Sar	1048
Ga0186256_126430	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense	821
Ga0186256_128910	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	721
Ga0186256_130283	All Organisms → cellular organisms → Eukaryota → Sar	669
Ga0186256_131110	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	639
Ga0186256_133000	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	572
Ga0186256_133456	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	557
Ga0186256_133954	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	541

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186256_103286	Ga0186256_1032861	F080702	FGSSHFGSSFIFQFRVRVDSKFSVMSLKVLVAACSWPLVVTQSDGNPHHWDRLRRCDHAGYSPPCGACEGVGGIATSDTASDIKIVPCKVEASTENRLRPIWGDPFTELASHEILIGKKNDIACFQAFPSNDSTSTNCYKPQEVQLWSDMRGKKALVEKANQAGNAWGLLGNVTSTIYHQGANMWIVNQLPLFVTQTICTIPRSGGDPTQPAVNALQYNWVDNLIFVSTETLDVEYGVGSMKLDHWAFGPHHVWTDPATGLVVRMWQPFNGLEVFTPGSWKTEITPEGQGYLDELAADGKTAPKAAMPGGSTFRIKCGDDGFHQDTLEVPHPTSTGDLHRARTKVPRDAYRGESFASMSSVLNKWLLREVPNSRSCDEFSVEELQRLQIVLFTLRDPELNAVYNGTADVRHMPRELDVMAREWESLNAEAARDPELARMHRDGHCHEAVMWYVHHLPESMKASIRDRASLPLLSQMRHDLSLAQPHAVRVQRAYEEKVTCASCHSAVYPNTGGVVTV
Ga0186256_110352	Ga0186256_1103522	F016002	AASLGWTGVVALCADGMLSAHLEHILQCCRCAACDNHGGQNELQIQYGADVAGMNNSKAIQNDRFVRLGDPTDAANPRHQITQTDSFDITFTPRSFSNYSNRSTPMRSMTPRQKDLRDHLELPLLHTYPLPPICSPDEPEEERKKKLLEMYQEFALDLHTGMYLTQLTSSRDYSDIHCQLMEDLQTLKLDQSNGRIVEFPLTGVSKVYRIVKNDEKWYSAASGATGINTEHIVVVEFMRRKLAFVFKELQVAQRFLLCMELLIRRAQQKQAQKALRSLTPAFPPSSGGTGRDDCSTPRQVRDAQQRSGCVAVP
Ga0186256_112263	Ga0186256_1122631	F088217	MLSTSLCRCICGSRRGTSFDPHKVLGTDFDALDEVDEPPFQPPQNTGLLSYSIAVDQPLRGVPIRSGELWYLSAEEKAEPVNFTLYVNGFSFEHCGQEVAISLSPFSLVRNCKFQSNFSNLNLSQFKVFKVSLFTLGICYYYGVRGEDEHQGEEERSRWVFDISRATRLVTQSLFPPFNISCEPIHSVEETKRRLMAGYIIHHDDMLVASVLYCELHPQSDDQAKLVLYENELCQEPVMDIYLTERSICCEKVGINCSCFCVEDHQFSTRTLSERKLWLRAISNVKVKLQNRAPCPSTEDLKHYRLAIKEHINTIKATLEGQAPMDALLQRNARKSFSASGDSVDNSEPDGIFVSPQCDVTGYDHVGLEENMSVGKPAPMHVVPTSACDGPVGGLFDADPAAIPQPSGG
Ga0186256_112598	Ga0186256_1125981	F088217	MLSTSLCRCICGTRKGDRFDPHKVLGADFDAIDEVDEPAFQPPQIAGLLSYSIAVDQPLRGMPIRGGELWYLSAEEKAEPVTVTLYVNGFSFEHCGEEVSISLSPFSLVRNCKFQSNFSSLNLSQFKIFKVSLFTQGICYYYGVRGEDERQGEEERSRWVLDISRAMRLVTQSLFPPFDISCDPIDTVANTRRRLMAGYMIHHDDMLVASVLYCELHPQSDDQAKLVLYENELCETPVMDIYITERSICCEKVGINCSCFCVEDHQFTTRTLSERKLWLRAISNVKVKLQNRAPGPSGEELKHYRFAIKEHLSTIKATIDGQAPMDALLQRNARNVYEGDGDPDPDMFPSLDEEGRGDIGSIQLSMQPHDGAPITAVPGEAIIEETPASADNFFDAKPSTLIHAASV
Ga0186256_113030	Ga0186256_1130301	F058162	AQDAATWSTPLEFRVLALWDSTRKMPIPVGFIVGKDTDLVEHPQYAALGGDASFLSDLPDKYRVDPESHEYLMDCPPGTKGQAHCDVAIAWWIKKNYPDIEVDIITPVDISLKRLKANAMNFFMGYNNVSVTIENNAAAPRMMKAFNKCGNTIPTLELETFISQKSLYMKACMDAGVPMAPTIFAPKDKRSPASLLRQIKQRQWKNFVLKQSESGFSLGFLKLSVAECEASTVLKTYFKEYASCPEFIVQEAIDGFTRNWETRCFWYNGEFLYAIANMAAVSVADGAERIITGDDIPEEFLENAKRIGGEAIKALPPLRAPTGQEVPMVLVRTDIGCSDSAIYDKDTNWDPTQKTFFLNEIEPCSTTYFVRYLKFDCLPMYGKLYGDTARLVAEEMKKGPVKVSRSSTKARVVQKPASAKNAVVAAKLGKGAIVKRPAKMVKTKGKSN
Ga0186256_113643	Ga0186256_1136431	F058162	MPIRVGFIVGKDTDVVEDPKYAALGGDVSFLADFPDKYRVDPVSHEYLMDCDPGTVGHAHADVAIAWWVKKHFGDIEVDLIAPVDITLKRLKSNAINFIMGYNAVSVAIENNCEAPRMLKAFRKCGNTVPTLELEDFISQKSRYMRACMDAGVPMAPTIFAPKGKRSPASLLHQITQRGWKHFVMKQSESGFSLGFVKLSVESCQKDPSILKTYFKDYASCPEYVVQEAIDGFTRNWETRCFWYNGEFLYAIANMAAVSVSDGAERIITGDDIPKEFLENAKRIGREAIKALPPLKAPTGQTVPMVLVRTDIGCSDSPIYDRNTHWNPNQKTFFLNEIEPSSTTYFVRHLKFDCLPLYGKLYGDTARLIHEEMQKGPVKGSRSRLGTRVLKKPAVVSPVVPAKRGRLPLMKRPGKVVKTKGTKAT
Ga0186256_114620	Ga0186256_1146201	F064389	QESTQGTLEVSLVSRWVGRIGRLRTRRMTVQRVSLLDFPWVLDYILATRFNGSLKAIRHAVCSIVLTLRVVLSAAAELNALISQDSDADGAISAKPFVDNMAHVIAECVQNFPLCLDNDFFHSFLEPLPGHLQFLCGNFHPLTHMRFEDSAKQKAFEAQTGAITQALSQLPSQCSNLENYMSSQEPVLKQIQCIKEHLRSRLWVLMQDFRCLQGEEESVVEDMREAVRSVSELPDVVPDWPHVMGQTLLLLLPLWKLSALAVMKGQDSLMRFFTGPPHTASVNTQKMLQRLIEFLLSEKADIIEIVTWLASQPSSAALLSSVEAVEFLLPEASNSEEFAQFRKDGLLRVQHNVTLLQHHIPNNLRPKVSAVFSKTINSVHLYLQLYLRVIRSFLDAQKEVRTFVHDQLFIEVMLGLPLMTWLKTV
Ga0186256_117716	Ga0186256_1177161	F073576	LKRVCAGRIPLALADQCGGMAEATSLENLGAGDRVRVQGGRNFEKFHGGMEGTIILNSPESRNMTVQFDDVAMSGPEPLTVAYRHLEFAPNRGGYRSGAQPSAASGPAKSSGPAEPTGPLVEEHGGFKTRQLVQLHSLQGAAELNGKVGRLRKFDENSGRWEVDVRGGLGVKRLKEDNLQVPPVARVPEGLSAEDLKSRGNDCFKVFEFEDAIVFYTAAIKLLEAEGSSVEDGGKYVAVIYGNRSQCHINLCREIHGEDKFIGKDVRAHAMRANMDAAQAIELDPTNGKAYYRRGCAVLGMAPSASRSKEAVAYLEIALSGRASGGTDGIILPNAMRNEVSNLLDYAKRRLDSCIEAAVPDVEQCRENCKQQ
Ga0186256_119441	Ga0186256_1194411	F011080	MPSSLRAREGKLSVQEMKAQLETLRKPTAKMMEEVFKKYYDLCMAADPPMTQIDLCEPSINWKALLMSLPPPQNSSILGCGIRKVILKETDCVYEGIYRFHVERLDGSLEVFEWREAYDDPYHSYKDKSFRHDVDTALRAAVLPQLIEYKEMLAKDNQMEFYSSISGSALPWERAVVQHFPTTFESLVDAFLNEKQLRLEQVKLEHCAEHAYRIQDPELLERWRAFHRATAHYRIISTSEAMEEDHL
Ga0186256_120838	Ga0186256_1208381	F001051	RDLRDVVPEKFIMGNTLATDTIPVLVTMVDVHNPKSQDQFYFCNVGSGGASTKVIGRSQTLSVEVGVTTVLSVIVYECPEPVFTPETARCLGVLRIPIERLAERYSSGLFQQWFNLDTRSDPRAPAGDPQQLISKFEQAYADAVADVYQPKVCVSVIGSAFEVQRGGRQTCAIFVGEDVKTQAGPDLKALIASHKQQAAYIDALHEELRRMNVPSYRPVTGGQSMGPPASMPPAIMGPPMGSMSPPHNFDRSVGNMPPRTMPPMSMNQSMGTPMGGPFMSSMGPPTSSMGHPMGSMNVGPPMGVPSSMMVP
Ga0186256_121171	Ga0186256_1211711	F000342	MQPVPDDRWPNYKTAGGRGPAGSVFTPGKRRRMNLVAICLNIFMPWLLFSWVFGVLSYSFHYQHPFLAWCCALAGFVVAGVQAFLAVQARKRERDPMWYTFGAVACFVAVVLGCIFGDLNFWYNMQPYYDIENLNTYPSVSPSREKGQQLMDAGRVYFADDTALDMRKAMGFKNLDLYCVAPIVNSNSQLASYDFWAVGINCCSGVASDFRCGEFNNPHARSGLRLMRDDQRPFFRLAVQQAEAAYNIKATHPLFFYWMQDPVAEMNAYRNDGFKYYLLGIFSHFSFNLFCVVAAVVGFSKIGRY
Ga0186256_121400	Ga0186256_1214001	F001051	RDLRDVVPEKFIMGNTLATDTIPVLVTMVDVHNPKSQDQFYFCNVGSGGASTKVIGRSQTLSVEVGVTTVLSVIVYECPEPVFTPETARCLGVLRIPIERLAERYSSGLFQQWFNLDTRSDPRAPAGDPQQLISKFEQAYADAVADVYQPKVCVSVIGSAFEVQRGGRQTCAIFVGEDVKTQAGPDLKALIASHKQQAAYIDALHEELRRMNVPSYRPVTGGQSMGPPASMPPAIMGPPMGSMSPPHNFDRSVGNMPPRTMPPMSMNQSMGTPMGGPFMSSMGPPTSSMGHPMGVPSSMRVS
Ga0186256_126430	Ga0186256_1264302	F058161	SLHELRFRRVFVRSCMMKRVEFNGTYCYSTGDMFCGTLNVRGKPAGRGILYYWDSGECDVGCFDDQLRQTGEGIRYSKDRDMSYKLFDGELAGGAVDLEEALRIMELEETPAMRTRDTIPEPTGYDPARHKQMTAWYNYRQMAGLPLNESAYGPSPYPPIWRTEEDE
Ga0186256_128910	Ga0186256_1289101	F074344	NEYPSMHTVKLQPLTSGKISAIVFWYVIEMDVEGEVLLTNWPETIPPTFSMLERDMHRPDPNRQAVHYFQGHYCKDLVMDEPLELDVGYTQSWPQFVWPGTEMVQKESGEKIAKPPPMPRHQLAFEKFKHETSELEKKLQQGLMFDEEMLGDGFAAAERVALEPNGNPNYMIDPNLANYFHLMFFL
Ga0186256_130283	Ga0186256_1302831	F001618	SSSPNSAPMWRPDAGPCVAQVLEWGEHPDDVEYERTLKAMPKKILKRREITVKDDLVKKVKAKMERVHFSLVQWHLSDYSKSSSPGEKASIIHVFYESKDERRVLNAFASSGIDLESVEAVPVDPKSSLRHEQDIMYMPKEVFLEDDQLYEEGPPQSLEEIAAKFT
Ga0186256_131110	Ga0186256_1311101	F085123	EPLCQAISVEVLSNQESFRCEDLCEIVWIFCVLQTYHEELFRLMFKQLELCPKISTDALCLLYETHLVLDSEHKETYAKYRMDMDAVQSLLEHYKEHRKDSRRCAERQRADIGTALRSLVEGSVHVNHRTSTGLLVDVAALRKRSSSDGFIHVDVDCAMTIVRCLDQDESSPASVLIEGPVSLKRRILQKHGLHLITVRESDWRELEESRDKR
Ga0186256_131409	Ga0186256_1314091	F000085	VFCVANCPLLRGGRGSVRSMIMRALPLCVMAMTVTRVSAQNWPGCLEQNVVIRNAGQALFTNLQGFGAVIGCFLDDCLMTDKFVAMEMDSCAKVCFSLPDCAFWVWGTEEGERKCWFRTGDSGREPGEGWVSGSKACHPKGTTRMEMGNDECWEGGFGYKNCCDPSFGPNGNPQCWDGSFNYDRCCFPRDEL
Ga0186256_133000	Ga0186256_1330002	F009075	LEGFPERQIPAMSSGDVMFMTSEPTMQKASASFVAHIRQTLQRAQEVTQAVSEAETVADEAMKFCEAIKSQHNVSAKKFHLTAKPAAPVPPLAASMTREIQTSVVWTQTMLQMCTLAEGGAEVQNGAKLSFVKSTPNE
Ga0186256_133456	Ga0186256_1334561	F007529	YLHIIAEKIMEMTLDIYVTPVKMVDDISALGLRHVGYGIPTELFGPFVSACVEMLNTYTKDESVIDAFRWSLGLVSQMLVRTIQEGSTIVMKAITTNNSKLLRKAISCAPRGERASWTLLVQVGTQDISPLAWSIESGNLKAAEAIIKDLLSFRADRDRYYYGCDELFGRHPDIVQKLRDFAPTL
Ga0186256_133610	Ga0186256_1336101	F000085	HFCFWIRSALTSHMYSWRLLLGMPLVASQQWPDCVEKNTVIRNADQALMTNLQGYGATIGCFVDDCLDTDKFVAREMASCAKVCLSLPACTHWVWGTEEGEQKCWFRTGDAGREPGQGWTSGSKSCHPPGTTVLTMGNDNCWSGGFDYNMCCSASHGPNGNMQCWDGEYNYDQCCYPKDE
Ga0186256_133954	Ga0186256_1339542	F001154	MVKVTIGKVEDPWCEIELTEEDIEDWKKGVDICEEKLKEVIQLPPITLDNCHEREDGDLQWDEVTFEEEVNGKYWHAVIMGLHRIREDFIKKQRRMKHLDWYMTMKQTSDKRNPKYYV