Scaffold Ga0186232_111950

Overview

Basic Information

• Taxon OID: 3300017328
• Scaffold ID: Ga0186232_111950
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 112 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0735)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1154
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -48.0
  • Long. (^o): -16.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038969	Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186232_1119501	F038969	N/A	MVFVLLPIVVSMMSTAAIDAFSNKSAHQQQPLHSLSSRSIGHQSGSVRPTRRKSALSFSPADIGGAATLLSMKLDGATAIVNPTQVLTDASYVVMDPTKFFPDIQISQLRMQYAQVLGRLMILGTSFLPHHGIHPEEMAVQLFLLSVSMKPIIRSVQLYKCITSAKGECEEECALEFEELEAALNMPTTTIQPAGIAV