3300017328: Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 112 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0735)

Overview

Basic Information

• IMG/M Taxon OID: 3300017328
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211944 | Ga0186232
• Sample Name: Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 112 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0735)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44458089
• Sequencing Scaffolds: 16
• Novel Protein Genes: 22
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	5
Not Available	10
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -48.0
  • Long. (^o): -16.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004251	Metagenome / Metatranscriptome	446	Y
F010973	Metatranscriptome	296	Y
F016355	Metatranscriptome	247	Y
F017781	Metagenome / Metatranscriptome	238	Y
F038969	Metatranscriptome	164	Y
F058660	Metatranscriptome	134	Y
F068121	Metagenome / Metatranscriptome	125	Y
F083646	Metagenome / Metatranscriptome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186232_105260	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1854
Ga0186232_111375	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1194
Ga0186232_111509	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1183
Ga0186232_111950	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1154
Ga0186232_116961	Not Available	860
Ga0186232_117049	Not Available	856
Ga0186232_118804	Not Available	779
Ga0186232_119455	Not Available	751
Ga0186232_119571	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	746
Ga0186232_120619	Not Available	707
Ga0186232_121559	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	672
Ga0186232_121947	Not Available	657
Ga0186232_122628	Not Available	633
Ga0186232_124442	Not Available	576
Ga0186232_125176	Not Available	554
Ga0186232_125782	Not Available	536

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186232_105260	Ga0186232_1052602	F068121	MKQYGSDDDIEKRIGLSRKDHENRNMLNELPKGKITPSVDDPTIWKDEDGRPWKLNPDEIAVYHQPTNIVSAEIRAFVGKVIPSIRNPNLKFISPNADGRYSEVCANRYTGELVIEQQLIGTFNFATDAPNAMKDAKYPAHGEHERLDVTPHNEYGGKYKHIARDIPIGSLEKGPVILGLLEEEPV
Ga0186232_110362	Ga0186232_1103621	F010973	MLCAVNKNSTMTPFASNYETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQTVLSNTFIVVLVVIVLVTGLVAYNANPVSSSNQFRLGHYAAIVDGNKGGGITGSKNGGVTIGGLPNWRPNWSKSF
Ga0186232_111375	Ga0186232_1113751	F038969	MVFVLLPIVVSMMSTAAIDAFSNKSAHQQQPLHSLSSRSIGHQSGSVRPTRRKSALSFSPADIGGAATLLSMKLDGATAIVNPTQVLTDASYVVMDPTKFFPDIQISQLRMQYAQVLGRLMILGTSFLPHHGIHPEEMAVQLFLLSVSMKPIIRSVQLYKCITSAKGECEEECALEFEELEASLNIHTPSIQPAAIAV
Ga0186232_111509	Ga0186232_1115091	F038969	MVFVLLPIVVSMMSTAAIDAFSNKSAHQQQPLHSLSSRSIGHQSGSVRPTRRKSALSFSPADIGGAATLLSMKLDGATAIVNPTQVLTDASYVVMDPTKFFPDIQISQLRMQYAQVLGRLMILGTSFLPHHGIHPEEMAVQLFLLSVSMKPIIRSVQLYKCITSAKGDCTEECALQFEELEASLNIAPAIQPAAIAV
Ga0186232_111950	Ga0186232_1119501	F038969	MVFVLLPIVVSMMSTAAIDAFSNKSAHQQQPLHSLSSRSIGHQSGSVRPTRRKSALSFSPADIGGAATLLSMKLDGATAIVNPTQVLTDASYVVMDPTKFFPDIQISQLRMQYAQVLGRLMILGTSFLPHHGIHPEEMAVQLFLLSVSMKPIIRSVQLYKCITSAKGECEEECALEFEELEAALNMPTTTIQPAGIAV
Ga0186232_116961	Ga0186232_1169611	F016355	MLNENTSLKNAATAGDSNTTNKMVIGKINNYQRTFLIVAGSLLALLVLIAVAGTSGGQHLQSSAYETTEGAVALKDYQGDSANLALTNDIFGLGALSENDEGSSCPNVCSLFFFRCVFCS
Ga0186232_117049	Ga0186232_1170491	F010973	MTPFTSNYETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQSVLNNKFVVVLVVVVLGTGLVAYNAKPVPSSNQFHLGDYASIVDGKGGGITGTENFGETDNGPHSAWPKHYSF
Ga0186232_118804	Ga0186232_1188041	F016355	MATENTSLKNNTPAGDSNTSDEMVIGQHSTYQRPFLIVAVSLLTLLVWIAVADKSGGKPLASSAYEIAEGAVALADYQVDSANLALAKEIFGLDAVSENKGKI
Ga0186232_119455	Ga0186232_1194551	F016355	MLTENTSLKNVTPAGDSNTTNEMVIGKINNYQRTFLIVAGSLLALLVLIAVAGTSGGQHLQSSAHKMAKGVVALADYQVDSTNLALTKDIFGLGVVSENDEGSAGCCCGRGCTHPGCAWC
Ga0186232_119571	Ga0186232_1195711	F004251	MVNSQELKEETALFLKKDVLAVGIFDVSLTGGKRIVAPAAAGLAAGLITKHIQKNVIDKKNEGDKEDDKKEYSMGNKFLTGAIGLATAAGTQQLMKSHDAKKSGLTPIMIVAVTKNTVYLLDWKGTHNKGKGPTEILDEFNLNKATIKNHTRGLVHHTIDIKEDGNHAKIECNLGATHSNKEMNREVIKLLKETN
Ga0186232_120399	Ga0186232_1203991	F016355	VIGKINNYQRTFLIVAGSLLALLVLVAVAGTNGDQHLQSSTQKIAEGAVALADYQVDSANLALTKDIFGLGAVSENDEGCHGGSLCKFYSHGDPCYCSF
Ga0186232_120619	Ga0186232_1206191	F010973	MTPFTSNYETIKETSSKDKSLDLALISGDMTIPSQGKIQSTFLQSVLSNKFTVAFVVVLLGTGLVAYNANPIASSNQPHFGDYAAIVDGSKGGGFTASENGNEDGGGSVNCPWPYHCRDEDPDPNLEIDSSF
Ga0186232_121559	Ga0186232_1215591	F017781	PGSFRVMKDYQKSFPNNLRVGYNAVPQSEWTKLINTSHDVLRAVQCSNDGALVPNWATIGVSDGNIVHTGGGFSGSGTSQYEYGAEAARTTFRVALDAAFYPEKSSEWSPYLSSYNWRLDGGFQQNGSFSSNTFPSCRGPNTNTNIHMFGDWRNNAFISGPTYSALIAASSDITNAEAMIDAAGTELAGELPGSYYPRSWAMITNLMLNGAMESAGNTLKQ
Ga0186232_121947	Ga0186232_1219471	F016355	IMPTENTSLKNTTPAGDSNTTNEMVIGKINNYQRTFLIVAGSLLALLVLIAVAGPSGGQHLQSSADKIAEGAVALADYQVDSTNLALTNDIFGLDAVSENDESCGGYVIGCLTRIFFCIIVT
Ga0186232_122247	Ga0186232_1222471	F016355	MNTLNISHIAFQSTTKQLIMSNENTSLKIVTSAGDSNTTHEMVIGKSNTYQRPLLIVAGSLLALLVLIAVAGTNGGLHLQSSAHEIAEDAVALADYQVDSA
Ga0186232_122628	Ga0186232_1226281	F010973	YETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQSVLSNKFAVAFVVVLLGTGLMAYNANPVPPASQFRLGDYAAIVDGSKGGGFTGSKNGGELQDSGSGCYSCVQNDW
Ga0186232_124256	Ga0186232_1242561	F016355	MSTENTSLKNTTPTGDSNTTNEMVIGKINNYQRTILIVAGSLLALLVLIAVAGTSGIQHLQSSTYEIAEGAVALKDYQGDSANLALTNDIFGFGAVSDNDKGSNYCAAACDACASTCNAIGICYGICY
Ga0186232_124442	Ga0186232_1244421	F058660	VFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGDCTEECALEFEELEASLNIAPAIQPAAIAV
Ga0186232_124602	Ga0186232_1246021	F083646	FDRFFPMSVDPSETGPWDPSKTLNPYLKGITTHITPQPLAHWNDSSVYQCKSHIAQAVPSMCAGHFDANPCFPVAFLCSHLFSIGAESVAELSGVSLPYTKRNTESVNEGNARNSVTIKDLVLDAQTLCMAGTYGLDVDCTTQYNPNHKDGPVYETILKATSDCAEKHDVATVKVTYALNEEIA
Ga0186232_125176	Ga0186232_1251761	F016355	MPTENTSLKNATQVGDSNTNNEIVIGKINTYQRTFLIVAGSLLTLLVLIAVADTRRGQHLQSSANEIADGAVALAEYQVDTANSALEMDIFGMSANSGNEKWCGFLSDKCSC
Ga0186232_125781	Ga0186232_1257811	F010973	YETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQSVLSNKFAVAFVVVLLGTGLMAYNANPVPPASQFRLGDYAAIVDGSKGGGLTGSNNGGTDKDGCNCGWGPMIHGKHGKNRQ
Ga0186232_125782	Ga0186232_1257822	F016355	PAGDSNTTNEMVIGKINNYQRTFLIVAGSLLALLVLIAVAGTSGIQHLQSSVYEITEGAVALKDYQDDSANLALTNDIFGLGAVSENDEGCDPLGLLLGLIICCPCRN