NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186684_119172

Scaffold Ga0186684_119172


Overview

Basic Information
Taxon OID3300017280 Open in IMG/M
Scaffold IDGa0186684_119172 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from Ligurian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 638 ?mol photons light - Strombidium inclinatum S3 (MMETSP0208)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)561
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameLigurian Sea
CoordinatesLat. (o)43.3Long. (o)10.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000935Metagenome / Metatranscriptome828Y

Sequences

Protein IDFamilyRBSSequence
Ga0186684_1191721F000935N/AMKYTALFVLGALATSQALVSDNQDKLYNLMQLQTSECPEPLEITEDELHYQLGEFSRNFQMEHWNNAMKIKDELEKKGAHTRFAVTTKELYDKSFSFPKVRNYDYAVEQMNELEHYEDNLNNNISNNLHLKKFIEIAKKVRANLNDKYDIGFIDPGVEGDWQ

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