Scaffold Ga0186519_113527

Overview

Basic Information

• Taxon OID: 3300017279
• Scaffold ID: Ga0186519_113527
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in K/2 medium, 17 C, 35 psu salinity and 333 ?mol photons light - Calcidiscus leptoporus RCC 1130 (MMETSP1334)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 948
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -34.46666667
  • Long. (^o): 17.3
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063376	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186519_1135271	F063376	N/A	SNLKIAYDAFDYKGTALPQTMAYFQWLKKHLSAGHVLAWMLMWNGQKYPIYGLTPPEGMYGHVEPVIGIQSNHPLNDTTIYDDDVVVHYTDGGTNTVYRRLSTLPCKWAGAGHKAECGWYQYGLGNPYGFGWAATGFTHDDKHAQAVPAYLHIQPWKSEPDTRGGEQPEALKGTLTATGLVAGTTYTIYRWDSIETAFTYAEQYNKASFKATSDMYVYADDKSFLSDGATYYRVLKAEPSLVESGV