3300017279: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in K/2 medium, 17 C, 35 psu salinity and 333 ?mol photons light - Calcidiscus leptoporus RCC 1130 (MMETSP1334)

Overview

Basic Information

• IMG/M Taxon OID: 3300017279
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212231 | Ga0186519
• Sample Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in K/2 medium, 17 C, 35 psu salinity and 333 ?mol photons light - Calcidiscus leptoporus RCC 1130 (MMETSP1334)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35468902
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus	2
Not Available	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): -34.46666667
  • Long. (^o): 17.3
  • Alt. (m): N/A
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004926	Metagenome / Metatranscriptome	418	Y
F009840	Metagenome / Metatranscriptome	312	Y
F063376	Metagenome / Metatranscriptome	129	Y
F071872	Metatranscriptome	121	Y
F102465	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186519_108134	All Organisms → cellular organisms → Eukaryota → Haptista	1313
Ga0186519_112639	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus	997
Ga0186519_113527	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus	948
Ga0186519_114454	Not Available	897
Ga0186519_116606	All Organisms → cellular organisms → Eukaryota	789

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186519_106048	Ga0186519_1060481	F102465	SGLEMSLPAAHVNTPTRAIRCLVDADSAHPIASFLGDAAYSILQLGHTAYLGNLLSPFTCASTQAGAGAGGGDAGTQLRAQKRKLFFSGFIVPLFFPELMLKYKYNGTIQVPLKAFRGDIDFARACLPTVEPNVDLGVLTLLVTYLNEHGGSLDSGAVTIRDNLATSKMTTSNLSEEWTKVYGPIMTSAAGLCRKLAPDYFAKLPVWLCNFLEGMEVSHYLALFGDTPTVEVERIFAAVRKFRPAIHNVCVPAELEGLLCAIHARAMACKPMDQE
Ga0186519_108134	Ga0186519_1081341	F071872	VFGDVNLAEEQVQGKYAGSPGEGGWPTIRTYNAETGYEGAFAGDWKEANSLDGAMCDVFGKEETMQRYIEEMSGIHAPGVFVGGVLCTDFDCLCAQKDAGACSKQETTYHTKFKVAPLADVQSRLKLLSASLAKSGKSDEWMKQRITILKLLASTRASDETAASDSKQEL
Ga0186519_112639	Ga0186519_1126391	F063376	CGGHDEEILSCNIAEAWSNLKIAYDAFDYKGTALPQTMAYFQWLKKHLSAGHVLAWMLMWNGQKYPIYGLTPPEGMYGHVEPVIGIQSNHPLNDTTIYDDDVVVHYTDGGTNTVYRRLSTLPCKWAGAGHKAECGWYQYGLGNPYGFGWAATGFTHDDKHAQAVPAYLHIQPWKSEPDTRGGEQPEALKGTLTATGLVAGTTYTIYRWDSIETAFTYAEQYNKASFKATSDMYVYADDKSFLSDGATYYRVLKAEPSLVESGV
Ga0186519_113527	Ga0186519_1135271	F063376	SNLKIAYDAFDYKGTALPQTMAYFQWLKKHLSAGHVLAWMLMWNGQKYPIYGLTPPEGMYGHVEPVIGIQSNHPLNDTTIYDDDVVVHYTDGGTNTVYRRLSTLPCKWAGAGHKAECGWYQYGLGNPYGFGWAATGFTHDDKHAQAVPAYLHIQPWKSEPDTRGGEQPEALKGTLTATGLVAGTTYTIYRWDSIETAFTYAEQYNKASFKATSDMYVYADDKSFLSDGATYYRVLKAEPSLVESGV
Ga0186519_114454	Ga0186519_1144541	F009840	MQQASALLLLPRAAAAADRKPTLKEMVAQLDASTPQEDRNAAGEKADHFPQISFEGAQGQGRKVVFTVPHENLSPPSFSYIELMWIKDASSGAILTAKKFSASDPNLVITAFGSSGQKLTAASKDNKYGIWQGTFVVP
Ga0186519_116606	Ga0186519_1166061	F004926	GRSLHCVRVKNPGQGADWTVDAVWAHVEAMRAAFAASGTEPIVYVHNHDFDGRGAHIGAALFRRAQAAGFPYLVVDGAYRKNGTHNDNTVLAAALTLSPVQRDALAEYNHNQQRIEELLCRFDSRTSQMTPWDSSWAGGTEGSDLRIAKEYAIDARKVNAAKEVATAVFPLERAVTPFSEYKLRLGLAILLEPLIEPKTAAAVKAWVAAGGKLKVGGPVLVGLKRWETLVAKPPEVDMLLANMAAELEAALAEEAAMVVADG