Scaffold Ga0186465_116276

Overview

Basic Information

• Taxon OID: 3300017273
• Scaffold ID: Ga0186465_116276
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from English Channel grown at 18 C, 40 psu salinity and 447 ?mol photons light - Elphidium margaritaceum (MMETSP1385)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 871
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: English Channel
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054572	Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186465_1162761	F054572	AGGAG	MVRPEIFLTNTGIPNPLAKLDPRYHPLGQPGPRHRGPVWICKVPWGLRLPAFVLTYCFLAWNGRHFMFPHRARTVHNVELPIFTEREVRGEWWDRFCKHSDPFRFGHIYAKIQEDRIRKAKREGLLPENYPENEEQLNQMDPAVFEAMIPEIKKLKFVPGKDRCDGMVGYRGTMPKYHGIAEE