NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186099_1004649

Scaffold Ga0186099_1004649


Overview

Basic Information
Taxon OID3300017268 Open in IMG/M
Scaffold IDGa0186099_1004649 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 15 C, 32 psu salinity and 608 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0143)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2039
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037016Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0186099_10046492F037016N/AVIHRRAMSRLLVATAVVLVGVGAVDHRDLHRARTKVPRPPFKGKTPHEMGSNLNAAMRRMFPNTKPCEEWTAEGLQAYQEQLHMHRHEDLDSIYQSSNDNRRMVHASLDDYRTHWTRVNELVRTHGHLAKMHRDGHCHEAVMWLVHHVPVEEQQTRFANQVAPLLPLSAHYGPCGSNATASELEVCNVYEGMRSCAECHSGSGIPMQDYNDPNGYIPEDPKLPGYARQRRCDQNYLPKCGPCEGIGGPYWGDDLKYFQPTNCEVVATPEQVAQADRVLPQFGEQLIVHQLGSDRLARTQNAANFALYSQIRSTLWYDFPLNGTSTGTAVDGMAKLRHDTFYDDLKYKWLDNGLVSEVHLQSRAQRDANVTGPMISLLHGLLGYGKYMGGLTCLADPVGVPVLGGSVVVNGSAHSSFMEGADYKGRVTIGVEYDGFKMGDKGNGDMKAKRNMTVDHYSKWFLHIFMDADKQSPTYGLPVRFYGPYSGFAVYIAINKTQPPAEAWDTACVGEQINGWPSEEHKPLFPCVGKKIKDYPCMVVGKTHKEVCDPWANASAAVNQTMEQMPQFETFKGAFGTVRIPSNLLNTPQV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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