3300017268: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 15 C, 32 psu salinity and 608 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0143)

Overview

Basic Information

• IMG/M Taxon OID: 3300017268
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211811 | Ga0186099
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 15 C, 32 psu salinity and 608 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0143)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 59019327
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2
All Organisms → Viruses → Predicted Viral	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013853	Metagenome / Metatranscriptome	267	N
F022203	Metatranscriptome	215	Y
F024007	Metagenome / Metatranscriptome	207	Y
F037016	Metatranscriptome	168	Y
F043734	Metagenome / Metatranscriptome	155	Y
F049376	Metagenome / Metatranscriptome	146	Y
F050807	Metatranscriptome	144	N
F057909	Metagenome / Metatranscriptome	135	Y
F069584	Metagenome / Metatranscriptome	123	N
F071920	Metagenome / Metatranscriptome	121	Y
F074888	Metagenome / Metatranscriptome	119	Y
F079481	Metatranscriptome	115	N
F083576	Metagenome / Metatranscriptome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186099_1004564	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2055
Ga0186099_1004649	All Organisms → Viruses → Predicted Viral	2039
Ga0186099_1005549	Not Available	1885
Ga0186099_1010548	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1409
Ga0186099_1012300	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1304
Ga0186099_1016376	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1108
Ga0186099_1017808	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1053
Ga0186099_1019201	Not Available	1001
Ga0186099_1019861	All Organisms → cellular organisms → Eukaryota → Haptista	979
Ga0186099_1023771	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	855
Ga0186099_1037138	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	548
Ga0186099_1038412	All Organisms → cellular organisms → Eukaryota	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186099_1004564	Ga0186099_10045641	F013853	VPAQVKISQPIADTGSKWDSYSKFRLGGMLSKVPRHIRAAGDPNRLAFTLGYPPFVAVSVGDKYLLTFDTTRVNEDLGLTFPEDYGQIAGFQWLPNLVLLVGLTNGYIVAVDFGALIKLQQSHKLPDRVSAMGTTKVFNEYLQDLSAFYTSATGQRVACCGDTAVKIVHRTGVELEVHLEVALDRKPTIGEFLDKVEWDDRAAAFACSSTDGYLYVHEILD
Ga0186099_1004649	Ga0186099_10046492	F037016	VIHRRAMSRLLVATAVVLVGVGAVDHRDLHRARTKVPRPPFKGKTPHEMGSNLNAAMRRMFPNTKPCEEWTAEGLQAYQEQLHMHRHEDLDSIYQSSNDNRRMVHASLDDYRTHWTRVNELVRTHGHLAKMHRDGHCHEAVMWLVHHVPVEEQQTRFANQVAPLLPLSAHYGPCGSNATASELEVCNVYEGMRSCAECHSGSGIPMQDYNDPNGYIPEDPKLPGYARQRRCDQNYLPKCGPCEGIGGPYWGDDLKYFQPTNCEVVATPEQVAQADRVLPQFGEQLIVHQLGSDRLARTQNAANFALYSQIRSTLWYDFPLNGTSTGTAVDGMAKLRHDTFYDDLKYKWLDNGLVSEVHLQSRAQRDANVTGPMISLLHGLLGYGKYMGGLTCLADPVGVPVLGGSVVVNGSAHSSFMEGADYKGRVTIGVEYDGFKMGDKGNGDMKAKRNMTVDHYSKWFLHIFMDADKQSPTYGLPVRFYGPYSGFAVYIAINKTQPPAEAWDTACVGEQINGWPSEEHKPLFPCVGKKIKDYPCMVVGKTHKEVCDPWANASAAVNQTMEQMPQFETFKGAFGTVRIPSNLLNTPQV
Ga0186099_1005549	Ga0186099_10055491	F050807	GARTTPLTHPPLAVQHTEGGKQRLSLGLNKMASGDHALEAGDFITTARAQNEVAITVRGAAKARARLLMKLTPADLGVSSVKAAWQNGGAQIAVASAVDGNCVVSLYGRKGDKLRVHNLGAGPPSWCDWDCAGHCLALMQEGTGLYLWDVGMPEQLAASEGNQPLRLCPSITVATSFCMWSRVHSQLAIGTQGGKVIVFNKKEGVMQLHDRKGKHGAAVTCGDWLFDNRLGLASGTRVKISKPVPEAGAQWESYSKFKLSGMLSRVPRKFKDAGAPKLLSFSLKFPPFVAVCIGDNYMLVFGTSGHHANEDVGLTFPDDYGPITGFQWLEDDVVLVALANGYVTSVDFGAMVRMRQQHGLPECVKATGTTKVFNEYLKCLTYSTASQKIACVGDRGFKVIQRKEEELEVLADISLDYELTLGNCLETIRWDSEGKAVCICATNGYMWTYDILTQ
Ga0186099_1010548	Ga0186099_10105482	F074888	VLADFALLHAFQQSGQDHTVEAQCMLIQQLFPRLSAKQVAKLQDRRVWGSPWQPGGAFLGAPNICVTAQKAREWQRMFDHAAAYCEAIYGEPVDLDGVRSDTMTCLALESLPLPVYDIMS
Ga0186099_1012300	Ga0186099_10123001	F049376	SGKWFADITADSDVWLLRHDTKYAHVHFNGTSMPLLTFHVSEIHSQTREQQAANNTGPMVSLIDGIPSFIPGGCTCVADPVGVPDVSHFRTAGLIPGGDDGMEYLGRINLTIAEHTGETVTVDHWANWFFHVFMDIDPTVPWYGKAPRRLASAYAGTATYANWDLRDPKIADPTVWTRGIPTSPERVGPDHGKYCMNPQKVAMCANISQTTFPPKPATQPERTPAPWAAVHASFLPSMSASRAHRTHLLSKAAH
Ga0186099_1014984	Ga0186099_10149841	F083576	LNRMSMPRGHNATLQLDKLMRLHLAAVLFAGSARGLQLAPTAPALRGTARVAPAVMQLWAGRKRSRYEDDGSRLQGADSISNVDEKLKGGLFSNFKFGTEVEVKGTEVKKGAKKKAAPRGMAPDNSDRGLGGNNAYRNTESARLNGDKSQLIRKAKLEAYINSEEEASDGTFGKIISGSALLSIFGGLVGVYLYYGGDGLLTATSKQRALSVTRQVGVEVCASVDCLPQE
Ga0186099_1016376	Ga0186099_10163761	F022203	PPITDVRNTTTPTHAPRVNMLYKLVAMAAFLVCTDALKIDANMGRRSVVAKGAALGALAPLAAFAELKKAGDAEIYKRADEGKLNAARVIERAKTGDLVDGSSATCSELDALIAVDRDAIEFEKDKVDARFGNDKAKVQATEDTLQAQVDNLKKIRKNKGCTSAQANLNQASDFEVYKRADEGILNSARVIERAKAGKLVDGSGATCSELERIIIQDKKAVQFEKDKLEAMGSKVDPKDKQIVAEAEKAIEKQLVKLAGLQKAKGCQ
Ga0186099_1017808	Ga0186099_10178081	F079481	ACGEVLRSSRSCNLPHTMGTAAGFFGITYQGAVNGLASNTLSIFNMDHPDDRAWLKLCFDFVAPGGKLKHDQIVEFLQFFYRHRAEGPTQSGSFLYAYPENEAQFLSSLFSSADAELVFDDMLNNCMEAQANFAEPAAPLEYNSNNVLRTDMVKHTRKMLDPQQQFRKPLLTSQEVGWDLTKDSMPGRPFHLRTSATTQFADAAEKQAWGRSIGGEFSEFATRKLLEFGGFGMGV
Ga0186099_1019201	Ga0186099_10192011	F069584	MTGPFPDQKMIDDKSLWFGEKPPGPCYIACPCDPLIDASEELGFFEDGTSCTAAAMPCFSSAPPGAPCAKGTGCYCTTFWCCLIATAAGPQAPCLLCYIAKLRQKTMEKAGVPPEGLGKAFMYSLAPGIAVNQISRELALRKMHPRLKTYTGTVTTYKGGSPSVEVMVR
Ga0186099_1019861	Ga0186099_10198611	F024007	FFFSLSSVSSSSVFTMAKSPAAAPPPEKNDGAIVVALVLLVAALCTAFFGAVALYASADIVLTGEQKQKYVRARRLARLLSGWANVGNAVVHALLIAMLLSDTARYKVFFPDEAEMPIGPVFLLIANAYVGRATLKGGGLQTAFAWNSFVAVAGSLIPIVWPKFLDVGLATWPYLAIFLWLGIWAFESTAFFFSAVAFSLKDAHAIKAV
Ga0186099_1023771	Ga0186099_10237711	F071920	NSKCPAYWELQAPHVATDFDFDRDIPGYYYELAFHDLTQRPLCPSAPRCITSEKAVMNHSDGVRYVNDTWNLQCFGHPYPQTLLFNQTAANGYLCGYVPTTLIPFLPKSVVAGLVFPDTIVDFKSGPDGWLLEYQCVEAFGSVRFVGINFYSKLKTEAAFEEMYAAAMARGLGLWMNSKPWGLSRVNHTDCPLEPHVRQLV
Ga0186099_1037138	Ga0186099_10371381	F043734	ARSAPSQMFTFFRAKQLGFPAARWGGAVGVIGFFLLYEDLPQLIMQTQYGVFPGWDGVAREFGLMAKKTEEE
Ga0186099_1038412	Ga0186099_10384121	F057909	TQKWRERITTEMQFAGRFAKYQEASMTPEQLAEMAKVTAPPERRWTHGPTFLFDLGKEATGGVTPYEMKDARDTWYSKHRVKELQDGQSNTGGTVLSSHAYGDNLKDYHDWTKPEFARQPVIRDNFFRSTGALATLRALARTGRTARILRAASATLLPRFPRARCAAQDDDFLG