NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186463_111317

Scaffold Ga0186463_111317


Overview

Basic Information
Taxon OID3300017261 Open in IMG/M
Scaffold IDGa0186463_111317 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from English Channel in enriched f/2 medium with filtered seawater, 15 C, 35 psu salinity and 328 ?mol photons light - Coccolithus braarudii PLY182g (MMETSP0164_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)901
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameEnglish Channel
CoordinatesLat. (o)50.033Long. (o)4.366Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024007Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0186463_1113172F024007N/ALKIMAKAAPHAQPTNDGGIVVALVLLVAALASIFFGAVALYASADIVLTSEQKQKSVRARRLARLLSGWANVGNAAVHGLLIIMLVTDSERYKQFFPDEAEMPLGTAFMLVLNLLVGRCTLKGGGIVLALIWNSFVAVAGSLIPVVWPKFLDVGMITWPYLAVFLWLSIFAFESFAFFFSVVAFALKDAHAVKED

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