Scaffold Ga0186316_121325

Overview

Basic Information

• Taxon OID: 3300017254
• Scaffold ID: Ga0186316_121325
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 233 ?mol photons light - Symbiodinium sp. Mp (MMETSP1122)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 917
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058692	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186316_1213251	F058692	AGGAGG	MDHPGGSAGYVRKEGSSFTPGQRKRLNVVAITINILAPWLVFCGIFTALSFQLHYRSPTLAWCTALAGLALSAVSAFLAHRTRMREQDPTWCTFAAMAYFLATALAATLGDMNYWYHMQPFYDIENINSYPDVSPARERGQQLMDAGRVYFEDGTALDTSKSMSFKNLDRYCVAPITSGDAPLSSYDFWAVGVNCCGGAKGEFRCGEYTNPRARAGLRLMRDDQRPFFRLAVQQAEAAYNIKATHPLFFYWMQDPVAETMSYKASGLSHALAAVAAHFVFNVLCVAGAALAFSR