3300017254: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 233 ?mol photons light - Symbiodinium sp. Mp (MMETSP1122)

Overview

Basic Information

• IMG/M Taxon OID: 3300017254
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212028 | Ga0186316
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 233 ?mol photons light - Symbiodinium sp. Mp (MMETSP1122)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52735323
• Sequencing Scaffolds: 15
• Novel Protein Genes: 19
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000085	Metagenome / Metatranscriptome	2467	Y
F001767	Metagenome / Metatranscriptome	638	Y
F003025	Metagenome / Metatranscriptome	512	Y
F004725	Metagenome / Metatranscriptome	426	Y
F015603	Metagenome / Metatranscriptome	253	Y
F018723	Metagenome / Metatranscriptome	233	Y
F034936	Metagenome / Metatranscriptome	173	Y
F039474	Metatranscriptome	163	Y
F043414	Metagenome / Metatranscriptome	156	Y
F048099	Metatranscriptome	148	N
F054571	Metagenome / Metatranscriptome	139	Y
F058692	Metagenome / Metatranscriptome	134	N
F062433	Metatranscriptome	130	Y
F067800	Metagenome / Metatranscriptome	125	Y
F097378	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186316_108502	All Organisms → cellular organisms → Eukaryota → Sar	1638
Ga0186316_109835	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1531
Ga0186316_117134	All Organisms → cellular organisms → Eukaryota → Sar	1100
Ga0186316_117872	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1066
Ga0186316_121325	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	917
Ga0186316_126435	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	728
Ga0186316_127175	All Organisms → cellular organisms → Eukaryota → Sar	704
Ga0186316_127412	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	696
Ga0186316_127561	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	691
Ga0186316_128371	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	665
Ga0186316_129412	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	632
Ga0186316_130232	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	607
Ga0186316_131575	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	569
Ga0186316_132008	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	556
Ga0186316_133373	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186316_108502	Ga0186316_1085021	F001767	GSRFRFTNFFLYLQRSLPGQISFGRGMATNAPLLPKQKQPHSKASIFYGADEYLEELKKKYAHDHEIAAMKNLLPGEGDPNAAGVGESKDKMLKVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMMYMWNVLTAIFVGQCLMIVAYAAALASFPEHWWTCTLCFGIPFSYLAIQNIYIDHDVMHGATFPVYEFQRFLTHPFADFISLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPMGPNWYKYLLTVPWIPVIHFFGLNDTGGLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRVKHNSFVLCLWACVWLLGTYPLGRPLSEGWRFMFTVSVFARIGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHAVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGHK
Ga0186316_109835	Ga0186316_1098351	F043414	VLEEEEGGCSPWTMAKAMKTMKAKKPVRKVITSKAIKSTKAAPAAVGNFKIRIGIIHGKVFDPIKVGTHDRQYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIMRLHPDIFHVDFMTMEQVTEKRLARNHLTFNFWGDMSIALMNEKPKLARRLQKIQSNPNTRHHPAWDYYEWILHKSRYMKACERQGIPMIDTIHVEKGFNAREVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGNVFDEIRNFFVDGEWAYSVYTDGVDYEGFWEQPAGKLKEACKALAIRTMEEVKKVHKWEGKRINSLLNRIDIGVIPDKSKKLGYHIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQASEMLKRSLAAKRKMPSPQKVRQLLAVLDERLAK
Ga0186316_117134	Ga0186316_1171341	F015603	HKAMARGCTWRSGGAGLPAAVLLVTIASLASAQDLSTVCSHENDDNVAGYGEIRDGETVYRDIRFNQTHRWYYQNQSVTTMNQPDQYRKLIINLEPCRGVVYLFVRKTRRCYPNPYSCIKNVNTAFETREAAMCNWTHFMSEIDGSRDGAPTFFEVPLSSTKHFISVYSPTDSASYTLTILADIGAWPRPGSNGRLAARQLSELQVQISWDAAGFIPEGVTEVKQYWVYSSMLVEWDNRTNMAVFLRSNKTMNTVCGLQNNTDRPYTTVPASECSNGKCNVTIGGVITDKRYVFNIVAESERGHRMAYAGLIMRTDWEVVRQAASERTLRVVGAVSGSVLGMVIIIYFLMLKLYG
Ga0186316_117872	Ga0186316_1178721	F097378	MLCHFPLLLDMAHLHSMVPRGXXXXLTLQYLNYARWTAQQHSCGMFRALGFMAQEHLRTADGRWTPLGFAKFWRPAVTLVNETVHWGMKVPAAMLLFDKFRELGSHSGLFLAVALSTGGEVVATGWSERFGVHMGLKQHISTYQESLQIASKARGGLLAGAWAGAAGLWVRNFSWNFAFFEWKRFLHNAVDATPANAPAWFCAHLDWLRSLEKKNQANVLTFEAATLGTYLTFFNMAGDNIKTKMQADPARYPSFGMTVREIWMHHGLLGFTRGSLFKGIYLILGSTLAIGIQERLTEIMAALFK
Ga0186316_121325	Ga0186316_1213251	F058692	MDHPGGSAGYVRKEGSSFTPGQRKRLNVVAITINILAPWLVFCGIFTALSFQLHYRSPTLAWCTALAGLALSAVSAFLAHRTRMREQDPTWCTFAAMAYFLATALAATLGDMNYWYHMQPFYDIENINSYPDVSPARERGQQLMDAGRVYFEDGTALDTSKSMSFKNLDRYCVAPITSGDAPLSSYDFWAVGVNCCGGAKGEFRCGEYTNPRARAGLRLMRDDQRPFFRLAVQQAEAAYNIKATHPLFFYWMQDPVAETMSYKASGLSHALAAVAAHFVFNVLCVAGAALAFSR
Ga0186316_123682	Ga0186316_1236821	F000085	FGSSTLLTASSRLKPPRRSPPSIRELASSLSSVIMVREHFRWLAALLIVDIAAAQNWPGCQEQNTVIRNAGQALFTNLQGYGAVIGCFLDDCMSSDKFVANEIESCAKVCFSLPECTHWVWGTEEGEQKCWFRTGDAGREAGEGWISGAKTCHPPGTTVLPLGNSECWAEGFGYENCCEAKFGPNGNAQCWDGVYNYDRCCFPKEEL
Ga0186316_126435	Ga0186316_1264351	F003025	CNKEFWSKWVPRRVKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARLGFSAAWMFITNFTHSLPWNEFLAQDPARTWPVLHNVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWLPNGDEETQMQKTQKKRSMMMKQGR
Ga0186316_127175	Ga0186316_1271751	F039474	FGSSLQPQLAQSTFASAVSLAFPGAMLTSVRRIALRRSLGVRAVAGHGQPMRRQSFGFGDPFPPNAPGVGGEHQLYPPETMANTAKYITENMTNVPKYKEIIEGIGYPGQKHSAGGLCTLGRIYYGPGRYDYGRPKMPKGWLANYFYPIWEFGHIFFVCDRWIAWRLLRHILALTICYIPFNIQMHWNKEMIEDYKKHHEW
Ga0186316_127412	Ga0186316_1274121	F062433	LLGRAAEEFQALLTLVANLRQAAEGARPESLGPDRAKPVPKPPFCWQPSQEYEKEFQVTGEHNEFVTKVGDFEDQGWVIPVGGSWRLTRGGIYRWTIRIERKCTSRPQLQLGIHGANHNQPWRLVTTSRCSWSRDDEPWQDRPGGDRLIEEGSYVHMEVDMRGVSSKTGTFAMAINDEPFEQLFDDIPLGQPYALIPVVSMGGNQSQIRLCPNY
Ga0186316_127561	Ga0186316_1275611	F048099	LKPCGLETRSPGRLLALRRGGGAGMSFAAGLTKIVAGKKSELADREKIAESWKNQEEKLLDEAVDLFKNRCVKEAEQQKCEATISFEVITREITDFPKRILTDSTYFVDSWPSGTNAESWFYATRGVNSAWSAGAPILFAEVLQAMLPKFVERVKDLGFNECNHEAGTWKVAVSWSLPEEAPEKKKRRRD
Ga0186316_128222	Ga0186316_1282221	F000085	LHAAQAGVPGGQMARAVRLLGLAWCGVAGQDWPACQEQNIVIRNAGRALFTNLQGFGATVGCFQDDCQNTDKFVASSMDSCTKVCQSLPECEFWVWGQEEGEQKCWFRLGDDGREAGEGWISGGRACHPPGQQAIVMGNVECWIDGFNYDTCCDPKFGPSGNAQCWDGVFNYDRCCFPKDEL
Ga0186316_128371	Ga0186316_1283711	F034936	WLKLVPHEGRASNPFFRQASIANMQKSQSEGSLAFLKNSKVGSATGFMLVSGGIMAIPHGKKSKGLLDFAARFTAVSEYQEKFREIPHCYASMDRKPLAPYNPNATRSRLALEDAPVPLKNASTIEFRDKFCVHKRRFVTTHKNYYTGERPDMRSNPGMIADSTRLKKKLQDM
Ga0186316_128786	Ga0186316_1287861	F000085	AAGAAYCRGAQQSGRSSAWRCFFLQGAMVSMTSRSVLLLPLGLAAASWPGCQEQNTVIRNAGQALFTNLQGYGATIGCFLDDCMSSDKFVASEIESCAKVCFSLPECKFWVWGTEEGEQKCWFRTGDAGREQGDGWVSGSQSCAPPGTTALPLGNSECWAEGFGYENCCEAKFGPNGNAQCWDGVYNYDRCCFPKEEL
Ga0186316_129412	Ga0186316_1294121	F018723	RHSPVPSWPGRRRPGIMTAEKAADGKGQPTAKKGGKEPFVQQFELKDVYQHFCDRKTKLLPLADVPYVLRAMGLTIYSEEEKSIREQVEKVDGMGKPVSMKTMQAWVEEHGNKYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKAETFDKVMKGGDSAVGTSIKGDSCSLDEFLNFLQK
Ga0186316_130232	Ga0186316_1302321	F034936	MAMGKSNSETGADFVKNSKVGSASGFMVVAGSILAIPHKTGTKMKIQTGPRFNGTSVYADSFKEIPHCYASMDKKPLIPYSANATRSRLAAEDAPVPLKNASTIEFQDRFCVHNRRFVTTHKNYYTGEMPDMRSNPGMIADSTKLKRMLMEK
Ga0186316_131575	Ga0186316_1315751	F054571	KSYRWPGPGVVHEVVWKTFRESVYRTKQDVLLELYSPHRPQHRTHLMVLDLIAESLSNLTALKVARMDTANNYVLPEFGLKDKEKASTFFFIAAAPEKHRRPRRLATKLGRPEELPGMLLRLLQREMRGHDCDFAERSAWVHQEAQRRIRRLRALEKDYEKKMQDEWVQKEMEEFERYKRLGKFDNLNM
Ga0186316_132008	Ga0186316_1320081	F004725	KPVGLRQKTLRRSCVLLLIFPLLAMATSAPLLAKEGKGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVVGYCAALACFPEYWWTCTLCFGIPFSYIAIQNIY
Ga0186316_132932	Ga0186316_1329321	F004725	AHCVFQGSCQALVVMVSRAPLLATEGKTGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVLGYCAALACFPEYWWTCTLCFGLPFSYIAIQNIY
Ga0186316_133373	Ga0186316_1333731	F067800	FGSSGSSPAAPCPVPSPAMDKVMPVVGGLAGLWVASKVVPIMYRWELIPGVGSEEWWARAKTIRYDHYTEGIVYSPYDTGEPIREMPEECKGKMLLRQRRGGWKLQSEMEQE