NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186352_104842

Scaffold Ga0186352_104842


Overview

Basic Information
Taxon OID3300017224 Open in IMG/M
Scaffold IDGa0186352_104842 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from North Sea grown at 20 C, 30 psu salinity and 440 ?mol photons light - Ammonia sp. (MMETSP1384)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2077
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorth Sea
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094899Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0186352_1048421F094899N/AEMMLSRGSKRGAISILSTNKRSFFDYIRVANEVDAGQSLDEIASNMTKESDTKESASFGWQWLEWFQQNAPEKYAEYASNRSQFQRWEQYLGERGVKTSKKISFEDYKKRIADASFVDDLEVNYYVERDTISSIENMQTLNSWPSSSVASFQQNCEKNGDLIVKPLTEEDKQRQKETLENAELYDEKMKLMAQEILKDFEQIDAERMMLGQETFLMELSQHPQFAEAMEDTYTAKQNYLDYAMLPIHRDYVKREKLNAIQDEERRKAFLERFEYGTKIYNGMDCSVPP
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Institute for Fundamental Biomedical Research
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