Scaffold Ga0186457_114217

Overview

Basic Information

• Taxon OID: 3300017147
• Scaffold ID: Ga0186457_114217
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from English Channel in K medium with silica, 15 C, 21 psu salinity and 310 ?mol photons light - Skeletonema costatum 1716 (MMETSP0013_2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 918
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: English Channel
• Coordinates
  • Lat. (^o): 48.45
  • Long. (^o): 3.57

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186457_1142171	F034938	AGG	MAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRIRFSANLTYPGHGPMWVGDLDFMYDINGDHCSLAYFGMDVCVDLTSKLIHKHGQPMMKDYGKTWLYVYLPQLTLDKVISYVKAGTGYDVSTEGTVYDPNRNLVAIKAKLHHESEQPKPSFWVVKDKDASGGDICFSRMGSVQEVNALPHQQHVHRGVGIFSVTMEVEGTPNFQPTPREGEEANLSFTLVSVRTWGITDCVAPIVHSPPDKWS