Scaffold Ga0186274_109453

Overview

Basic Information

• Taxon OID: 3300017081
• Scaffold ID: Ga0186274_109453
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 488 ?mol photons light - Imantonia sp. RCC918 (MMETSP1474)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 943
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -31.35
  • Long. (^o): -78.1
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057823	Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186274_1094531	F057823	N/A	CPCSRGEFKGRRVRMEAASRTGSSKGVYKRNGEIMAVPHKVGEASWAANEKSAARGGLSSTTKESFKDPNLKASLTPYHPNAMRSRLPVHFKGEAKPFRRFCQQRNQHTYDFFDKGATGAGFVRFRTTSQNYYEYDTKALAVGESNQGIVSEKSKWIHQKQTM