3300017081: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 488 ?mol photons light - Imantonia sp. RCC918 (MMETSP1474)

Overview

Basic Information

• IMG/M Taxon OID: 3300017081
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211986 | Ga0186274
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 488 ?mol photons light - Imantonia sp. RCC918 (MMETSP1474)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24499004
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): -31.35
  • Long. (^o): -78.1
  • Alt. (m): N/A
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007073	Metagenome / Metatranscriptome	358	Y
F009840	Metagenome / Metatranscriptome	312	Y
F032134	Metagenome / Metatranscriptome	180	Y
F056539	Metagenome / Metatranscriptome	137	Y
F057823	Metatranscriptome	135	N
F079481	Metatranscriptome	115	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186274_109025	Not Available	974
Ga0186274_109453	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	943
Ga0186274_110035	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	902
Ga0186274_112837	Not Available	731

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186274_109025	Ga0186274_1090251	F007073	FVFFFSSKMKVFVVLLALCVAALALDAAGEGSAGAPNQVVNPPNWHGTWTANNRYGGHMYACPKGNRLYGVYSDAGFFIGSMEGRRVEGTWYEGGRGDRNDWQGSFRIDISEDNQSFDGFYYRVTQDGYELRWHETRLGAPWPSNPTDEQCLVPGDEPLLGGFYNHPGQGNTPATYSLCKDEYDQIYGSFGSPDGFLEGWSVDSSTGFHGYRYDNNGQSGAYILRAISDSHVKGFYWRGRLARQNIATAVEENLTRTSYTASLDDCERVGPGFLRRLRGPTNSAGALTMSVAVVFVALFALLF
Ga0186274_109282	Ga0186274_1092821	F032134	KTYGHASQMAIAGDHARYQWTEQTPEERFAASSRGDMLNFGHPAKIEDGHVTYAHENTNPARANYKKTKPPVLAKHNFHIPGYGGFIPGVQSKNLYGKTQYAATNEALGEHYKRLGTAEAAKKPSTAPPAGSATAPQLGMLQFKPNGFMFQKRMQGEWNNGMLGARNYSAVRLKEGGHWNGDVLFKTTTGDVHTGHGNQDVPHIYSKGPEPTFENMEHALKHKSVYLGFYAM
Ga0186274_109453	Ga0186274_1094531	F057823	CPCSRGEFKGRRVRMEAASRTGSSKGVYKRNGEIMAVPHKVGEASWAANEKSAARGGLSSTTKESFKDPNLKASLTPYHPNAMRSRLPVHFKGEAKPFRRFCQQRNQHTYDFFDKGATGAGFVRFRTTSQNYYEYDTKALAVGESNQGIVSEKSKWIHQKQTM
Ga0186274_110035	Ga0186274_1100351	F079481	LACSSLAANMGTAAGFFGLTYQGAVNGLASNTLSIFNMDHPNDRAWLKLSFDFVAPDDKLRSDQVTDLLQYFYKGRAEGPTQSGSYVHSYPENEATMLRGLCTEAGDSLSFMQLLDALQGAQANFAEPTAPLEYSSNSVMRNDLLKHTRKLYEPQQQFRQPLTTAQEVGWALSKDQCPGRPFHLRTSATTQFSDAMEKQAWGRSIGGEFSAFATKKLLEFGGFGMGV
Ga0186274_112837	Ga0186274_1128371	F009840	PLCGIVMTMLCLAMLWTSAAALVPSSPPRQSVSRRPVVQQAMALPLASLLMPLAVSAAEKKPTLKEVVAQLDASTPKEERNTPPEQKADHFPKIAFEGSQGQGRKVVFTVPHENLSPPSFSSIMYMWIKDENSGAILTAKKFSPSDPNLVITAFASSGQKLTAASKDDKFGIWSGTFVVP
Ga0186274_114700	Ga0186274_1147001	F056539	LILLFACLISLAAAQLALVNPVGRGFSFGDARHGPCGQSPTEVGNRIAWEQDTVHEIEVQIFGAAGGGVIVDRYSCVLNGDDENPIEPILPIEGALKVEVPDVDDQIYRLYVRTPSFRCTGDVTMQLVYATENGHEFFQCQDIVLTYSGASSLTMSVLAVIAVVLMVL