Scaffold Ga0186274_109025

Overview

Basic Information

• Taxon OID: 3300017081
• Scaffold ID: Ga0186274_109025
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 488 ?mol photons light - Imantonia sp. RCC918 (MMETSP1474)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 974
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -31.35
  • Long. (^o): -78.1
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007073	Metagenome / Metatranscriptome	358	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186274_1090251	F007073	N/A	FVFFFSSKMKVFVVLLALCVAALALDAAGEGSAGAPNQVVNPPNWHGTWTANNRYGGHMYACPKGNRLYGVYSDAGFFIGSMEGRRVEGTWYEGGRGDRNDWQGSFRIDISEDNQSFDGFYYRVTQDGYELRWHETRLGAPWPSNPTDEQCLVPGDEPLLGGFYNHPGQGNTPATYSLCKDEYDQIYGSFGSPDGFLEGWSVDSSTGFHGYRYDNNGQSGAYILRAISDSHVKGFYWRGRLARQNIATAVEENLTRTSYTASLDDCERVGPGFLRRLRGPTNSAGALTMSVAVVFVALFALLF