Scaffold Ga0186392_109586

Overview

Basic Information

• Taxon OID: 3300017038
• Scaffold ID: Ga0186392_109586
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K medium, 20 C, 35 psu salinity and 320 ?mol photons light - Partenskyella glossopodia RCC 365 (MMETSP1318)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1052
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 37.4
  • Long. (^o): 15.61666667
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022342	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186392_1095861	F022342	N/A	HTHTHTHTQTQQQILSERPLYPTTTTTAKMGVLSAPEDKPKIVFHAAMMAIQNFGFFMMYYDIWGATPAGDTCSDTRFWCAFMSLTCFYVAFICVGMGYGGYTDDGVIFPLYWFLHLAGGACYTVCTIGLPVTRFSDEGKDCATLSPVNGDRLEAVIIMHISLYLVYVGSMLSITYFSYIKSTFYAGNPPQQVE