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Sample 3300017038
3300017038: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K medium, 20 C, 35 psu salinity and 320 ?mol photons light - Partenskyella glossopodia RCC 365 (MMETSP1318)
Overview
Basic Information |
IMG/M Taxon OID | 3300017038 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212104 | Ga0186392 |
Sample Name | Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K medium, 20 C, 35 psu salinity and 320 ?mol photons light - Partenskyella glossopodia RCC 365 (MMETSP1318) |
Sequencing Status | Permanent Draft |
Sequencing Center | National Center for Genome Resources |
Published? | N |
Use Policy | Open |
Dataset Contents |
Total Genome Size | 24893156 |
Sequencing Scaffolds | 1 |
Novel Protein Genes | 1 |
Associated Families | 1 |
Dataset Phylogeny |
Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota | 1 |
Ecosystem and Geography
Ecosystem Assignment (GOLD) |
Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Location Information |
Location | Mediterranean Sea |
Coordinates | Lat. (o) | 37.4 | Long. (o) | 15.61666667 | Alt. (m) | N/A | Depth (m) | 5 |
Location on Map |
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Associated Families
Family | Category | Number of Sequences | 3D Structure? |
F022342 | Metagenome / Metatranscriptome | 214 | Y |
Sequences
Scaffold ID | Protein ID | Family | Sequence |
Ga0186392_109586 | Ga0186392_1095861 | F022342 | HTHTHTHTQTQQQILSERPLYPTTTTTAKMGVLSAPEDKPKIVFHAAMMAIQNFGFFMMYYDIWGATPAGDTCSDTRFWCAFMSLTCFYVAFICVGMGYGGYTDDGVIFPLYWFLHLAGGACYTVCTIGLPVTRFSDEGKDCATLSPVNGDRLEAVIIMHISLYLVYVGSMLSITYFSYIKSTFYAGNPPQQVE |