Scaffold Ga0186350_109315

Overview

Basic Information

• Taxon OID: 3300017008
• Scaffold ID: Ga0186350_109315
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from North Sea in K medium, 14 C, 21 psu salinity and 372 ?mol photons light - Asterionellopsis glacialis CCMP 1581 (MMETSP1394)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 956
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: North Sea
• Coordinates
  • Lat. (^o): 51.7333
  • Long. (^o): 3.7667

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078213	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186350_1093152	F078213	GGAG	MEFATQLNIDPSQCFGDEGGIVGDSIGLEKGFSTMWNPPAVDAMMSRNDQESLTELGNAYKNAADNIGIQNLAPKKIGDTLRQGGTFVFRGDKTLFQHFDSKVGDNADIDAILASI