Scaffold Ga0186283_102108

Overview

Basic Information

• Taxon OID: 3300016996
• Scaffold ID: Ga0186283_102108
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 94 ?mol photons light - Pelagomonas calceolata RCC 969 (MMETSP1328)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1856
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -29.23333333
  • Long. (^o): -101.4833333
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030404	Metagenome / Metatranscriptome	185	Y
F062799	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186283_1021081	F062799	N/A	MGNIAARQASRSIYHDPSIRRALQLRGFATATRYGFIKGTGSGLRPAQKKAQAPNPQLRVALQQRYGELALQKKSQDSGKVRQLVASTGAKYRVPACDPWSRGQLFR
Ga0186283_1021082	F030404	N/A	MILALCTSALAFAPPRRGPCLGPLAYGRRGDAAHDRWRSTADALATWRGDEATVAKFWRIDCDDDGFTWERRWPRRKPVVEHVAWDRITRVCWECGEWLCMDNFYLIADDEDSEWVVPSGALDHGRLVDALDRKGLFSNKTYINCQCVSDGGFTICEANPNAKAPAPSTNLSYVDRLHATEQAPCRIIRRSKLKQN