3300016996: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 94 ?mol photons light - Pelagomonas calceolata RCC 969 (MMETSP1328)

Overview

Basic Information

• IMG/M Taxon OID: 3300016996
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211995 | Ga0186283
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 94 ?mol photons light - Pelagomonas calceolata RCC 969 (MMETSP1328)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20967099
• Sequencing Scaffolds: 15
• Novel Protein Genes: 17
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	15

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): -29.23333333
  • Long. (^o): -101.4833333
  • Alt. (m): N/A
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017306	Metagenome / Metatranscriptome	241	Y
F017397	Metagenome / Metatranscriptome	241	N
F023863	Metagenome / Metatranscriptome	208	N
F025972	Metagenome / Metatranscriptome	199	N
F030404	Metagenome / Metatranscriptome	185	Y
F033072	Metagenome / Metatranscriptome	178	N
F037241	Metagenome / Metatranscriptome	168	N
F039006	Metagenome / Metatranscriptome	164	N
F050839	Metagenome / Metatranscriptome	144	Y
F062799	Metagenome / Metatranscriptome	130	N
F070163	Metagenome / Metatranscriptome	123	Y
F075316	Metagenome / Metatranscriptome	119	N
F077349	Metagenome / Metatranscriptome	117	N
F093977	Metagenome / Metatranscriptome	106	N
F096036	Metagenome / Metatranscriptome	105	N
F105005	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186283_100100	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	6356
Ga0186283_100482	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	3441
Ga0186283_101892	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1943
Ga0186283_101992	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1899
Ga0186283_102108	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1856
Ga0186283_105266	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1201
Ga0186283_105966	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1118
Ga0186283_106014	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1112
Ga0186283_107189	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	990
Ga0186283_107937	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	924
Ga0186283_108280	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	895
Ga0186283_111917	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	627
Ga0186283_112065	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	616
Ga0186283_112324	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	597
Ga0186283_113344	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186283_100100	Ga0186283_1001001	F017397	VVPPGPDCLSQCINQIVAARPPLNHDIHAIDAIGSMAWRCGLPLLDSVSTAAFSPRKDLVKNYRNAPDSLISTQVGLISDPIFVCYGVYMVLMSVASFNNPRIGANLIMFENITYFFSSQTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNEAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSVVVGLVRIGTAKKPFDEIERWLGVVMSFVFLSLTAVPSAAMFFHKSVTKAKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRAQNAGF
Ga0186283_100482	Ga0186283_1004821	F077349	MAMAFVRMARQRHIVGPALLAASTLAFVPRATVCRGTDRFFASQQGGSEDDDVARLRRENAELKSKLARQKEPSESGGFLEGLAKTFGFGKTDEEKALEKQKKQMDSAIDEVFKGGGLVGGLMGSLAKGVVGAAGKMFAETQGDMDSVLRAIENRLRDRLGDDVQCSMPMQQMYSSSNINGNVVKQVQLVTQAQGSRGAGVVRATASIDGAGNVAIQSLDVDGSSVAGSVRGGGGKNDVIIDV
Ga0186283_101892	Ga0186283_1018921	F093977	MSCRRREYVRAQTASIRQVTVIGLEPEVQRLIQKQKRDTIAQRTAQDLAWSAIRAKMSGKLFDQQVALRETMSRVHAQRDFNENIRIGQSITALQCEFQHRCTITSRAQSGRIAKLQAELQKKLHLDRAKFQRMHQNLCMTKRDRLRTRRDQLACVRDTVYQLQCFGSRIVAEARNSDHAVWIQATISHVNTISKESFSVRTEEVLRRRDTTIGNIIHHDQALTHTWELGIMHAADAYETSCKDYHCAIIARLQIQRTNWIKHTKILIREIQSLNQEVCALKAIGDKTKNRWHDMEMALAKPSYEAGSHAYKLLRTQTSRQQTRAQELYLLDDKCAAAELPIKAITTNIRRLVATYDFLQGQHHEFHQRALISKNKAVQCHLRDNANRLVRTVDKIGLETVRHNHLTKMLASYTRS
Ga0186283_101992	Ga0186283_1019921	F070163	MRSADTSESTLWRGHLRECLADATQSYGSHTIAADPDELSRRWRKLPWAKQRELFKSWAQPRASDCYPGDLHLSWWWDLRSVGFGHYGSWSDDDMSTVVTKTTYYEVWLSASGTRVYRKTSSWCDLPANLVVPVVLAVGAFVVAGLAVGAAKLIMWLW
Ga0186283_102108	Ga0186283_1021081	F062799	MGNIAARQASRSIYHDPSIRRALQLRGFATATRYGFIKGTGSGLRPAQKKAQAPNPQLRVALQQRYGELALQKKSQDSGKVRQLVASTGAKYRVPACDPWSRGQLFR
Ga0186283_102108	Ga0186283_1021082	F030404	MILALCTSALAFAPPRRGPCLGPLAYGRRGDAAHDRWRSTADALATWRGDEATVAKFWRIDCDDDGFTWERRWPRRKPVVEHVAWDRITRVCWECGEWLCMDNFYLIADDEDSEWVVPSGALDHGRLVDALDRKGLFSNKTYINCQCVSDGGFTICEANPNAKAPAPSTNLSYVDRLHATEQAPCRIIRRSKLKQN
Ga0186283_105266	Ga0186283_1052661	F050839	VKRLFLQVFADAAAHGEPDDRAGARADVRTHRCPHALAERGPDFEAQLHPDFCAFGAAERAALVEAYVRTNVQADDTPVSQADRVERAPLNIVCLVSPTLPTPPALP
Ga0186283_105966	Ga0186283_1059662	F039006	MSLHDVMLSNDDLLAAVDLTVDFHGNEASVEEHGMVLLDVNRNHLCVQHEADLDQTEWWPTAHCMFGLQACLDNDGSTTCDQAESGSEDDLTLSGGETDLKNCDCSLDGVTSYCLSKYTDVEWSALDKTCDVSRLAKKSSGRAAQADDGATLWVTIDGIKYTYAEGAAYGGTNTEEGFGAWAARVMGVVCQSVQNAGQVVPESCAGYFPPH
Ga0186283_106014	Ga0186283_1060143	F050839	MQRRVTNAPLRADVFADAAAHGEPDDRAGARADVRTHRCPHALAERGPDFEAQLHPDFCAFGAAERAALVEAYVRTNVQADDTPVSQADRVERAPLNIVCLVSPTLPTPPALP
Ga0186283_107189	Ga0186283_1071891	F025972	KTSEFWLRAKGCPTAPINPTTPSAARHEATHPTKPPRRAEKAAMWKLLLLATATAVELKQKMIIRNTGSEDLAVYFMGALHEGDLSLWDGSETLNDIVSPGQTTARYVRYNDSFAVRSGDLKWRVRLSLYKNDDAEQPYKVTFHNVMTDEKDQPVELKHHAAGYLWIEPNHHVTHSAAQGHEFALRDRESKERLAVSVHALGRDEL
Ga0186283_107937	Ga0186283_1079371	F017306	MSAMQLELSQRTEDHGIADAYLVVVSTASDELVHEFCAYSSAYGGPVRPDPVTGLRAEQIDKGRATVRWEWSENSFDLASPGAYFERDVILDPLAWAGPVRKTPKTKPVAPAPKVDVSHELRAVDVAVKSEWRQNGCDDEWEIHVSHAATGTKLVWKGTSTAENQDIKKLRHTEVDGVVRIDFVYYCGENGSNSASDRSLFVKLGETGIEWVPKHVCSGRLHDGRCSGTL
Ga0186283_108057	Ga0186283_1080571	F096036	MMARHTALVAALCASTACALLAPPQRVRFMRPLKAAGLDPSSPQMQAEFEKLKDASRGFVEKELELMGIPHSADMDDMTIKLRLMEARIVMAAPAAAGPAANASPYEKLVFEKPAIKAYVDRLYNKGDINGANIFMEYINDPQQAQNRYGKEADYQAVFAKADELMAAPAFTSAKLAYSGFPMMGEDGLRGQMESIGAVKAFSVTEEDPVTGMTGTVEFEAEADAKTAVEKWDGADMGNDVMLSLKYQ
Ga0186283_108280	Ga0186283_1082801	F023863	MARRCLAVLALTSLSAAQNPWVNRRKNKDKDAPVAADPAAGDTDFSKLNDMVKNLQQAGAAGGQGEDMFAGMGDMWESLMDSPEMEEMLANPELLKATIKNNPLINAIPGASEQVEALLQSDAFNDPAQLKQAMRQGVDAMKAVGSEFGSQLGAQMKLAQQNPEAFKAQMEAMMSQLAGGPEQGRALMEAAKGLWDGSADPAQLEALSKLPGMEALADPEAMKRQMAELQKMMGAGQMPAMGGEL
Ga0186283_111917	Ga0186283_1119171	F105005	MYKAITLALALSAPALAIKKPAHGAAALRVRGGTFGFDAHQTGEQCGIEEPEKEVVKTIKTAVTYPIKKVFGIARGGALLDVSARETAEACEIEDPEPLVVRTIKAAFDYTAERVLESGVVPDELAKD
Ga0186283_112065	Ga0186283_1120651	F075316	MGLEWIRERRRSDKAAVVKRKKVVNPDTGETPEGYNKMLRDCARIALAGASASLLCGWPQIALVASAVAAGLLQQGTTYSIKNWKWTAVSWCLLPACLTAWFLRSTAGMVDPDRGYSIYILLVMVGRFTEFAAGSTVAIFLAFALAAPPDRSGEAR
Ga0186283_112324	Ga0186283_1123241	F033072	MKLVLALALGASAFGGFGKKSAAPAPSRGGGNQVAQGGQTVTNIQVPKIFTTAFGDPGRLAERAARAEAKKAEAEAQLIPTPARFAFAFGRPDILAERRAERLAKWEWSDEFLAKARPDQGNYGQGDVYDDGLTVLERAQIETGREAYLTGGAKLRYKRLTGQI
Ga0186283_113344	Ga0186283_1133441	F037241	LPICHMAAQLYKMRRRLLPLLLACTTAAKSTYWREVEAKKKRPAAAAYCPKRCFKTEASGDEKREVADLTCCSSAQGSLFELAAFVAATTETAVRGFSLGFGYVLVKATLRAADSDEGPQSGHDFGPAYRFARMAGLGVACSFVGLSMFVPVGLRLGHRLA